SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	617
Strain	Pantoea ananatis PA13
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017554
Location	1818308..1855693
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PAGR_g1653	1813311..1814765 [-], 1455	386078871	AMP nucleosidase Amn
2	PAGR_g1654	1815157..1816575 [+], 1419	386078872	MATE efflux family protein YeeO
3	PAGR_g1655	1817685..1818284 [+], 600	386078873	type VI secretion system-associated protein
4	PAGR_g1656	1818308..1818811 [+], 504	386078874	type VI secretion system protein VasD	TssJ
5	PAGR_g1657	1818833..1820173 [+], 1341	386078875	type VI secretion system protein ImpJ	TssK
6	PAGR_g1658	1820190..1821431 [+], 1242	386078876	type VI secretion system protein ImpK	TssL
7	PAGR_g1659	1821435..1825061 [+], 3627	386078877	type VI secretion system protein IcmF	TssM
8	PAGR_g1660	1825076..1825789 [+], 714	386078878	type VI secretion system protein ImpM
9	PAGR_g1661	1825800..1826822 [+], 1023	386078879	type VI secretion system protein ImpA	TssA
10	PAGR_g1662	1826903..1827433 [+], 531	386078880	type VI secretion system protein ImpB	TssB
11	PAGR_g1663	1827433..1828932 [+], 1500	386078881	type VI secretion system protein ImpC	TssC
12	PAGR_g1664	1829513..1829995 [+], 483	386078882	type VI secretion system effector protein hcp	TssD
13	PAGR_g1665	1830064..1830894 [+], 831	386078883	hypothetical protein
14	PAGR_g1666	1830891..1831706 [+], 816	386078884	hypothetical protein
15	PAGR_g1667	1832272..1834167 [+], 1896	386078885	FHA domain-containing protein	Fha
16	PAGR_g1668	1834164..1834955 [+], 792	386078886	protein serine/threonine phosphatase PppA
17	PAGR_g1669	1834966..1835964 [+], 999	386078887	putative type VI secretion system-associated protein
18	PAGR_g1670	1835981..1836808 [+], 828	386078888	putative type VI secretion system-associated protein	TagJ
19	PAGR_g1671	1836798..1837373 [+], 576	386078889	type VI secretion system lysozyme-like protein	TssE
20	PAGR_g1672	1837376..1839253 [+], 1878	386078890	type VI secretion system protein ImpG	TssF
21	PAGR_g1673	1839250..1840299 [+], 1050	386078891	type VI secretion system protein ImpH	TssG
22	PAGR_g1674	1840353..1842962 [+], 2610	386078892	type VI secretion system protein VasG	TssH
23	PAGR_g1675	1842992..1844455 [+], 1464	386078893	type VI secretion system, serine- threonine protein kinase
24	PAGR_g1676	1844467..1846710 [+], 2244	386078894	putative type VI secretion system effector protein VgrG	TssI
25	PAGR_g1677	1846720..1847100 [+], 381	386078895	hypothetical protein
26	PAGR_g1678	1847302..1847676 [+], 375	386078896	hypothetical protein
27	PAGR_g1679	1847771..1848157 [+], 387	386078897	hypothetical protein
28	PAGR_g1680	1848529..1851069 [+], 2541	386078898	pentapeptide repeat-containing protein
29	PAGR_g1681	1851066..1852136 [+], 1071	386078899	pentapeptide repeat-containing protein
30	PAGR_g1682	1852149..1852754 [+], 606	386078900	hypothetical protein
31	PAGR_g1683	1852764..1853156 [+], 393	386078901	hypothetical protein
32	PAGR_g1684	1853204..1855693 [+], 2490	386078902	putative type VI secretion system effector protein VgrG	TssI
33	PAGR_g1685	1855690..1856070 [+], 381	386078903	hypothetical protein
34	PAGR_g1686	1856323..1857069 [+], 747	386078904	hypothetical protein
35	PAGR_g1687	1857080..1857928 [+], 849	386078905	hypothetical protein
36	PAGR_g1688	1857941..1858381 [+], 441	386078906	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

SMA2263 , SMA3456, SMA2263, ECL_01567, ECL_03140

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PAGR_g1583	1735435..1735917 [+], 483	386078802	hemolysin co-regulated protein Hcp1	SMA2263
2	PAGR_g1584	1735948..1736430 [+], 483	386078803	hemolysin co-regulated protein Hcp1	SMA3456
3	PAGR_g1664	1829513..1829995 [+], 483	386078882	type VI secretion system effector protein hcp	SMA2263
4	PAGR_g1689	1858385..1862773 [+], 4389	386078907	Rhs-family protein	ECL_01567
5	PAGR_g3082	3340739..3344899 [+], 4161	386080271	putative membrane-bound sugar-binding protein RhsD	ECL_03140

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Proteins Genes

N/A