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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Y11_15561 | 1554082..1555101 [-], 1020 | 386308999 | hypothetical protein | |
2 | Y11_15571 | 1555485..1556762 [-], 1278 | 386309000 | putative sugar transporter | |
3 | Y11_15581 | 1557120..1558484 [+], 1365 | 386309001 | argininosuccinate synthase | |
4 | Y11_15591 | 1558616..1559095 [-], 480 | 386309002 | protein ImpF | TssE |
5 | Y11_15601 | 1559095..1559922 [-], 828 | 386309003 | protein of avirulence locus ImpE | TagJ |
6 | Y11_15611 | 1559948..1560790 [-], 843 | 386309004 | hypothetical protein | |
7 | Y11_15621 | 1560796..1561056 [-], 261 | 386309005 | hypothetical protein | PAAR |
8 | Y11_15631 | 1561168..1563912 [-], 2745 | 386309006 | hypothetical protein | TssI |
9 | Y11_15641 | 1564079..1567912 [-], 3834 | 386309007 | icmf-related protein | TssM |
10 | Y11_15651 | 1567921..1569297 [-], 1377 | 386309008 | outer membrane protein ImpK/VasF, OmpA/MotB domain | TssL |
11 | Y11_15661 | 1569294..1570643 [-], 1350 | 386309009 | protein ImpJ/VasE | TssK |
12 | Y11_15671 | 1570647..1571183 [-], 537 | 386309010 | type VI secretion lipoprotein/VasD | TssJ |
13 | Y11_15681 | 1571405..1571890 [-], 486 | 386309011 | protein ImpD | TssD |
14 | Y11_15691 | 1572222..1573718 [-], 1497 | 386309012 | protein ImpC | TssC |
15 | Y11_15701 | 1573742..1574194 [-], 453 | 386309013 | protein ImpB | TssB |
16 | Y11_15711 | 1574371..1574973 [-], 603 | 386309014 | fimbrial protein | |
17 | Y11_15721 | 1574958..1577489 [-], 2532 | 386309015 | putative outer membrane fimbrial usher porin | |
18 | Y11_15731 | 1577737..1578483 [-], 747 | 386309016 | chaperone protein fimC | |
19 | Y11_15741 | 1578545..1578673 [+], 129 | 386309017 | hypothetical protein | |
20 | Y11_15751 | 1578642..1579193 [-], 552 | 386309018 | fimbrial protein | |
21 | Y11_15761 | 1579369..1582038 [-], 2670 | 386309019 | clpb protein | TssH |
22 | Y11_15771 | 1582755..1584635 [+], 1881 | 386309020 | protein ImpG/VasA | TssF |
23 | Y11_15781 | 1584635..1585660 [+], 1026 | 386309021 | protein ImpH/VasB | TssG |
24 | Y11_15791 | 1585738..1586886 [+], 1149 | 386309022 | protein ImpA | TssA |
25 | Y11_15801 | 1586914..1587897 [+], 984 | 386309023 | putative fimbrial protein | |
26 | Y11_15811 | 1588002..1588127 [-], 126 | 386309024 | hypothetical protein | |
27 | Y11_15821 | 1588227..1589273 [+], 1047 | 386309025 | hypothetical protein | |
28 | Y11_15831 | 1589270..1589917 [+], 648 | 386309026 | hypothetical protein | |
29 | Y11_15841 | 1589918..1591588 [+], 1671 | 386309027 | putative OMPA family outer membrane porin | TagL |
30 | Y11_15851 | 1591595..1592080 [+], 486 | 386309028 | hypothetical protein | |
31 | Y11_15861 | 1592213..1592671 [-], 459 | 386309029 | putative luxR-family regulatory protein | |
32 | Y11_15871 | 1592673..1592816 [-], 144 | 386309030 | putative luxR-family regulatory protein | |
33 | Y11_15881 | 1593713..1594102 [-], 390 | 386309031 | xanthosine permease | |
34 | Y11_15891 | 1594199..1594381 [+], 183 | 386309032 | hypothetical protein | |
35 | Y11_15901 | 1594460..1595518 [-], 1059 | 386309033 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | |
36 | Y11_15911 | 1595523..1596158 [-], 636 | 386309034 | alpha-ribazole-5'-phosphate phosphatase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein