SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	618
Strain	Yersinia enterocolitica subsp. palearctica Y11
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017564
Location	1558616..1591588
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Y11_15561	1554082..1555101 [-], 1020	386308999	hypothetical protein
2	Y11_15571	1555485..1556762 [-], 1278	386309000	putative sugar transporter
3	Y11_15581	1557120..1558484 [+], 1365	386309001	argininosuccinate synthase
4	Y11_15591	1558616..1559095 [-], 480	386309002	protein ImpF	TssE
5	Y11_15601	1559095..1559922 [-], 828	386309003	protein of avirulence locus ImpE	TagJ
6	Y11_15611	1559948..1560790 [-], 843	386309004	hypothetical protein
7	Y11_15621	1560796..1561056 [-], 261	386309005	hypothetical protein	PAAR
8	Y11_15631	1561168..1563912 [-], 2745	386309006	hypothetical protein	TssI
9	Y11_15641	1564079..1567912 [-], 3834	386309007	icmf-related protein	TssM
10	Y11_15651	1567921..1569297 [-], 1377	386309008	outer membrane protein ImpK/VasF, OmpA/MotB domain	TssL
11	Y11_15661	1569294..1570643 [-], 1350	386309009	protein ImpJ/VasE	TssK
12	Y11_15671	1570647..1571183 [-], 537	386309010	type VI secretion lipoprotein/VasD	TssJ
13	Y11_15681	1571405..1571890 [-], 486	386309011	protein ImpD	TssD
14	Y11_15691	1572222..1573718 [-], 1497	386309012	protein ImpC	TssC
15	Y11_15701	1573742..1574194 [-], 453	386309013	protein ImpB	TssB
16	Y11_15711	1574371..1574973 [-], 603	386309014	fimbrial protein
17	Y11_15721	1574958..1577489 [-], 2532	386309015	putative outer membrane fimbrial usher porin
18	Y11_15731	1577737..1578483 [-], 747	386309016	chaperone protein fimC
19	Y11_15741	1578545..1578673 [+], 129	386309017	hypothetical protein
20	Y11_15751	1578642..1579193 [-], 552	386309018	fimbrial protein
21	Y11_15761	1579369..1582038 [-], 2670	386309019	clpb protein	TssH
22	Y11_15771	1582755..1584635 [+], 1881	386309020	protein ImpG/VasA	TssF
23	Y11_15781	1584635..1585660 [+], 1026	386309021	protein ImpH/VasB	TssG
24	Y11_15791	1585738..1586886 [+], 1149	386309022	protein ImpA	TssA
25	Y11_15801	1586914..1587897 [+], 984	386309023	putative fimbrial protein
26	Y11_15811	1588002..1588127 [-], 126	386309024	hypothetical protein
27	Y11_15821	1588227..1589273 [+], 1047	386309025	hypothetical protein
28	Y11_15831	1589270..1589917 [+], 648	386309026	hypothetical protein
29	Y11_15841	1589918..1591588 [+], 1671	386309027	putative OMPA family outer membrane porin	TagL
30	Y11_15851	1591595..1592080 [+], 486	386309028	hypothetical protein
31	Y11_15861	1592213..1592671 [-], 459	386309029	putative luxR-family regulatory protein
32	Y11_15871	1592673..1592816 [-], 144	386309030	putative luxR-family regulatory protein
33	Y11_15881	1593713..1594102 [-], 390	386309031	xanthosine permease
34	Y11_15891	1594199..1594381 [+], 183	386309032	hypothetical protein
35	Y11_15901	1594460..1595518 [-], 1059	386309033	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
36	Y11_15911	1595523..1596158 [-], 636	386309034	alpha-ribazole-5'-phosphate phosphatase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

ROD_27741

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Y11_15681	1571405..1571890 [-], 486	386309011	protein ImpD	ROD_27741

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Proteins Genes

N/A