I. Summary
SecReT6 ID618 insolico
StrainYersinia enterocolitica subsp. palearctica Y11
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Y11_155611554082..1555101 [-], 1020386308999hypothetical protein 
2Y11_155711555485..1556762 [-], 1278386309000putative sugar transporter 
3Y11_155811557120..1558484 [+], 1365386309001argininosuccinate synthase 
4Y11_155911558616..1559095 [-], 480386309002protein ImpF  TssE
5Y11_156011559095..1559922 [-], 828386309003protein of avirulence locus ImpE  TagJ
6Y11_156111559948..1560790 [-], 843386309004hypothetical protein 
7Y11_156211560796..1561056 [-], 261386309005hypothetical protein  PAAR
8Y11_156311561168..1563912 [-], 2745386309006hypothetical protein  TssI
9Y11_156411564079..1567912 [-], 3834386309007icmf-related protein  TssM
10Y11_156511567921..1569297 [-], 1377386309008outer membrane protein ImpK/VasF, OmpA/MotB domain  TssL
11Y11_156611569294..1570643 [-], 1350386309009protein ImpJ/VasE  TssK
12Y11_156711570647..1571183 [-], 537386309010type VI secretion lipoprotein/VasD  TssJ
13Y11_156811571405..1571890 [-], 486386309011protein ImpD  TssD
14Y11_156911572222..1573718 [-], 1497386309012protein ImpC  TssC
15Y11_157011573742..1574194 [-], 453386309013protein ImpB  TssB
16Y11_157111574371..1574973 [-], 603386309014fimbrial protein 
17Y11_157211574958..1577489 [-], 2532386309015putative outer membrane fimbrial usher porin 
18Y11_157311577737..1578483 [-], 747386309016chaperone protein fimC 
19Y11_157411578545..1578673 [+], 129386309017hypothetical protein 
20Y11_157511578642..1579193 [-], 552386309018fimbrial protein 
21Y11_157611579369..1582038 [-], 2670386309019clpb protein  TssH
22Y11_157711582755..1584635 [+], 1881386309020protein ImpG/VasA  TssF
23Y11_157811584635..1585660 [+], 1026386309021protein ImpH/VasB  TssG
24Y11_157911585738..1586886 [+], 1149386309022protein ImpA  TssA
25Y11_158011586914..1587897 [+], 984386309023putative fimbrial protein 
26Y11_158111588002..1588127 [-], 126386309024hypothetical protein 
27Y11_158211588227..1589273 [+], 1047386309025hypothetical protein 
28Y11_158311589270..1589917 [+], 648386309026hypothetical protein 
29Y11_158411589918..1591588 [+], 1671386309027putative OMPA family outer membrane porin  TagL
30Y11_158511591595..1592080 [+], 486386309028hypothetical protein 
31Y11_158611592213..1592671 [-], 459386309029putative luxR-family regulatory protein 
32Y11_158711592673..1592816 [-], 144386309030putative luxR-family regulatory protein 
33Y11_158811593713..1594102 [-], 390386309031xanthosine permease 
34Y11_158911594199..1594381 [+], 183386309032hypothetical protein 
35Y11_159011594460..1595518 [-], 1059386309033nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
36Y11_159111595523..1596158 [-], 636386309034alpha-ribazole-5'-phosphate phosphatase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Y11_156811571405..1571890 [-], 486386309011protein ImpD ROD_27741

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Proteins        Genes