 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | RSPO_m01062 (otsA) | 1197161..1198369 [+], 1209 | 386336065 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | |
2 | RSPO_m01063 | 1198485..1199267 [+], 783 | 386336066 | transmembrane protein | |
3 | RSPO_m01064 | 1199321..1199494 [-], 174 | 386336067 | transmembrane protein | |
4 | RSPO_m01065 | 1199515..1200198 [-], 684 | 386336068 | hypothetical protein | TssI |
5 | RSPO_m01066 | 1200259..1201047 [-], 789 | 386336069 | hypothetical protein | TssL |
6 | RSPO_m01067 | 1201044..1202390 [-], 1347 | 386336070 | hypothetical protein | TssK |
7 | RSPO_m01068 | 1202445..1202591 [-], 147 | 386336071 | putative transmembrane protein | |
8 | RSPO_m01069 | 1203399..1204046 [+], 648 | 386336072 | lipoprotein | |
9 | RSPO_m01070 | 1204083..1204595 [+], 513 | 386336073 | hypothetical protein | TssB |
10 | RSPO_m01071 | 1204588..1206078 [+], 1491 | 386336074 | hypothetical protein | TssC |
11 | RSPO_m01072 (sciK) | 1206167..1206670 [+], 504 | 386336075 | secretion system protein (evpc-like), hemolysin-coregulated protein | TssD |
12 | RSPO_m01073 | 1206731..1207204 [+], 474 | 386336076 | hypothetical protein | TssE |
13 | RSPO_m01074 | 1207267..1209117 [+], 1851 | 386336077 | hypothetical protein | TssF |
14 | RSPO_m01075 | 1209081..1210184 [+], 1104 | 386336078 | hypothetical protein | TssG |
15 | RSPO_m01076 (clpB) | 1210217..1212940 [+], 2724 | 386336079 | chaperone clpb | TssH |
16 | RSPO_m01077 | 1212977..1213861 [+], 885 | 386336080 | VgrG protein | TssI |
17 | RSPO_m01078 | 1213599..1214219 [+], 621 | 386336081 | vgr-related protein | TssI |
18 | RSPO_m01079 | 1214697..1215638 [+], 942 | 386336082 | hypothetical protein | |
19 | RSPO_m01081 | 1215822..1215974 [+], 153 | 386336083 | hypothetical protein | |
20 | RSPO_m01082 | 1215990..1217168 [+], 1179 | 386336084 | hypothetical protein | |
21 | RSPO_m01083 | 1217215..1217691 [+], 477 | 386336085 | hypothetical protein | |
22 | RSPO_m01084 | 1217952..1219325 [+], 1374 | 386336086 | twin-arginine translocation pathway signal harboring protein | |
23 | RSPO_m01085 | 1219458..1220537 [+], 1080 | 386336087 | hypothetical protein | TssA |
24 | RSPO_m01087 | 1220595..1221437 [-], 843 | 386336088 | peptidoglycan-associated lipoprotein | TagL |
25 | RSPO_m01086 | 1221434..1222420 [-], 987 | 386336089 | hypothetical protein | |
26 | RSPO_m01088 (icmF) | 1222417..1226352 [-], 3936 | 386336090 | transmembrane protein | TssM |
27 | RSPO_m01089 | 1226389..1227885 [-], 1497 | 386336091 | hypothetical protein | |
28 | RSPO_m01090 | 1227896..1228165 [-], 270 | 386336092 | hypothetical protein | PAAR |
29 | RSPO_m01091 | 1228204..1229052 [-], 849 | 386336093 | L-alanyl-D-glutamate peptidase | |
30 | RSPO_m01092 | 1229338..1230096 [+], 759 | 386336094 | hypothetical protein | |
31 | RSPO_m01093 | 1230234..1233446 [+], 3213 | 386336095 | vgr-related protein | TssI |
32 | RSPO_m01094 | 1233241..1233609 [+], 369 | 386336096 | hypothetical protein | |
33 | RSPO_m01095 | 1233666..1233947 [+], 282 | 386336097 | hypothetical protein | |
34 | RSPO_m01096 | 1233982..1234362 [+], 381 | 386336098 | hypothetical protein | |
35 | RSPO_m01097 | 1234346..1234486 [-], 141 | 386336099 | hypothetical protein | |
36 | RSPO_m01098 | 1234538..1235047 [-], 510 | 386336100 | hypothetical protein | |
37 | RSPO_m01099 | 1235335..1235583 [-], 249 | 386336101 | hypothetical protein | |
38 | RSPO_m01100 (aspC) | 1235604..1236791 [-], 1188 | 386336102 | aspartate aminotransferase | |
39 | RSPO_m01101 (nac) | 1236935..1237822 [-], 888 | 386336103 | nitrogen assimilation transcriptional regulator | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein