SecReT6
I. Summary
SecReT6 ID624 insolico
StrainEscherichia coli ABU 83972
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017631
Location3145080..3171349
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECABU_c30810 (csdA)3140260..3141465 [+], 1206386640290cysteine sulfinate desulfinase 
2ECABU_c30820 (csdE)3141465..3141908 [+], 444386640291cysteine desulfurase, sulfur acceptor, subunit CsdE 
3ECABU_c30830 (ygdL)3141959..3142765 [-], 807386640292HesA/MoeB/ThiF family protein 
4ECABU_c30840 (mltA)3142842..3144140 [-], 1299386640293membrane-bound lytic murein transglycosylase A 
5ECABU_c308803145080..3145580 [+], 501386640294hypothetical protein  TssB
6ECABU_c308903145639..3147177 [+], 1539386640295hypothetical protein  TssC
7ECABU_c309003147197..3148534 [+], 1338386640296hypothetical protein  TssK
8ECABU_c309103148531..3149196 [+], 666386640297hypothetical protein  TssL
9ECABU_c309203149209..3150861 [+], 1653386640298OmpA family protein  TagL
10ECABU_c309303150919..3151410 [+], 492386640299hypothetical protein  TssD
11ECABU_c309503151602..3154238 [+], 2637386640300ATP-dependent Clp protease ATP-binding subunit  TssH
12ECABU_c309603154250..3156712 [+], 2463386640301VGR-related protein  TssI
13ECABU_c309703156727..3157551 [+], 825386640302hypothetical protein 
14ECABU_c309803157548..3159524 [+], 1977386640303hypothetical protein 
15ECABU_c309903159534..3159806 [+], 273386640304hypothetical protein  PAAR
16ECABU_c310003159806..3161239 [+], 1434386640305hypothetical protein 
17ECABU_c310103161246..3164584 [+], 3339386640306IcmF-like protein  TssM
18ECABU_c310203164562..3166187 [+], 1626386640307ImpA-like protein  TssA
19ECABU_c310303166221..3167981 [+], 1761386640308hypothetical protein  TssF
20ECABU_c310403168035..3169024 [+], 990386640309hypothetical protein  TssG
21ECABU_c310503169035..3169541 [+], 507386640310hypothetical protein  TssJ
22ECABU_c310603169545..3169973 [+], 429386640311hypothetical protein  TssE
23ECABU_c310703169973..3171349 [+], 1377386640312ImpA-related N-terminal family protein  TssA
24ECABU_c310803171649..3172596 [-], 948386640313D-isomer specific 2-hydroxyacid dehydrogenase family protein 
25ECABU_c310903172668..3173264 [-], 597386640314sugar isomerase 
26ECABU_c311003173267..3174442 [-], 1176386640315aminotransferase 
27ECABU_c311103174442..3175971 [-], 1530386640316PTS system protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECABU_c309303150919..3151410 [+], 492386640299hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU