 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ECABU_c30810 (csdA) | 3140260..3141465 [+], 1206 | 386640290 | cysteine sulfinate desulfinase | |
2 | ECABU_c30820 (csdE) | 3141465..3141908 [+], 444 | 386640291 | cysteine desulfurase, sulfur acceptor, subunit CsdE | |
3 | ECABU_c30830 (ygdL) | 3141959..3142765 [-], 807 | 386640292 | HesA/MoeB/ThiF family protein | |
4 | ECABU_c30840 (mltA) | 3142842..3144140 [-], 1299 | 386640293 | membrane-bound lytic murein transglycosylase A | |
5 | ECABU_c30880 | 3145080..3145580 [+], 501 | 386640294 | hypothetical protein | TssB |
6 | ECABU_c30890 | 3145639..3147177 [+], 1539 | 386640295 | hypothetical protein | TssC |
7 | ECABU_c30900 | 3147197..3148534 [+], 1338 | 386640296 | hypothetical protein | TssK |
8 | ECABU_c30910 | 3148531..3149196 [+], 666 | 386640297 | hypothetical protein | TssL |
9 | ECABU_c30920 | 3149209..3150861 [+], 1653 | 386640298 | OmpA family protein | TagL |
10 | ECABU_c30930 | 3150919..3151410 [+], 492 | 386640299 | hypothetical protein | TssD |
11 | ECABU_c30950 | 3151602..3154238 [+], 2637 | 386640300 | ATP-dependent Clp protease ATP-binding subunit | TssH |
12 | ECABU_c30960 | 3154250..3156712 [+], 2463 | 386640301 | VGR-related protein | TssI |
13 | ECABU_c30970 | 3156727..3157551 [+], 825 | 386640302 | hypothetical protein | |
14 | ECABU_c30980 | 3157548..3159524 [+], 1977 | 386640303 | hypothetical protein | |
15 | ECABU_c30990 | 3159534..3159806 [+], 273 | 386640304 | hypothetical protein | PAAR |
16 | ECABU_c31000 | 3159806..3161239 [+], 1434 | 386640305 | hypothetical protein | |
17 | ECABU_c31010 | 3161246..3164584 [+], 3339 | 386640306 | IcmF-like protein | TssM |
18 | ECABU_c31020 | 3164562..3166187 [+], 1626 | 386640307 | ImpA-like protein | TssA |
19 | ECABU_c31030 | 3166221..3167981 [+], 1761 | 386640308 | hypothetical protein | TssF |
20 | ECABU_c31040 | 3168035..3169024 [+], 990 | 386640309 | hypothetical protein | TssG |
21 | ECABU_c31050 | 3169035..3169541 [+], 507 | 386640310 | hypothetical protein | TssJ |
22 | ECABU_c31060 | 3169545..3169973 [+], 429 | 386640311 | hypothetical protein | TssE |
23 | ECABU_c31070 | 3169973..3171349 [+], 1377 | 386640312 | ImpA-related N-terminal family protein | TssA |
24 | ECABU_c31080 | 3171649..3172596 [-], 948 | 386640313 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | |
25 | ECABU_c31090 | 3172668..3173264 [-], 597 | 386640314 | sugar isomerase | |
26 | ECABU_c31100 | 3173267..3174442 [-], 1176 | 386640315 | aminotransferase | |
27 | ECABU_c31110 | 3174442..3175971 [-], 1530 | 386640316 | PTS system protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein