 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | UM146_16035 (prfH) | 3330037..3330651 [-], 615 | 386605778 | peptide chain release factor-like protein | |
2 | UM146_16040 | 3330648..3331787 [-], 1140 | 386605779 | hypothetical protein | |
3 | UM146_16045 | 3331977..3332429 [-], 453 | 386605780 | hypothetical protein | |
4 | UM146_16050 | 3332439..3332837 [-], 399 | 386605781 | putative toxin YafO | |
5 | UM146_16055 | 3332840..3333133 [-], 294 | 386605782 | putative antitoxin of the YafO-YafN toxin-antitoxin system | |
6 | UM146_16060 | 3333185..3334240 [-], 1056 | 386605783 | DNA polymerase IV | |
7 | UM146_16065 | 3334311..3335081 [-], 771 | 386605784 | hypothetical protein | TagL |
8 | UM146_16070 | 3335041..3336780 [+], 1740 | 386605785 | flagellar system protein | |
9 | UM146_16075 | 3337099..3337596 [-], 498 | 386605786 | hypothetical protein | |
10 | UM146_16080 | 3337772..3338530 [-], 759 | 386605787 | putative exported hydrolase | |
11 | UM146_16085 | 3338833..3339573 [+], 741 | 386605788 | hypothetical protein | |
12 | UM146_16090 | 3339544..3340311 [-], 768 | 386605789 | putative glutamine amidotransferases class-II | |
13 | UM146_16095 (gmhA) | 3340516..3341094 [-], 579 | 386605790 | phosphoheptose isomerase | |
14 | UM146_16100 (fadE) | 3341334..3343778 [+], 2445 | 386605791 | acyl-CoA dehydrogenase | |
15 | UM146_16105 | 3343821..3344294 [-], 474 | 386605792 | C-lysozyme inhibitor | |
16 | UM146_16110 | 3344448..3345218 [+], 771 | 386605793 | hypothetical protein | |
17 | UM146_16115 | 3345489..3346001 [-], 513 | 386605794 | hypothetical protein | |
18 | UM146_16120 | 3346071..3346574 [-], 504 | 386605795 | hypothetical protein | |
19 | UM146_16125 | 3346803..3347288 [-], 486 | 386605796 | putative transposase | |
20 | UM146_16130 | 3347388..3347567 [-], 180 | 386605797 | putative H-repeat associated protein | |
21 | UM146_16135 | 3347825..3348115 [-], 291 | 386605798 | hypothetical protein | |
22 | UM146_16140 | 3348090..3349154 [-], 1065 | 386605799 | hypothetical protein | |
23 | UM146_16145 | 3349522..3350568 [-], 1047 | 386605800 | hypothetical protein | |
24 | UM146_16150 | 3350675..3352657 [-], 1983 | 386605801 | hypothetical protein | TssI |
25 | UM146_16155 | 3352673..3352783 [-], 111 | 386605802 | hypothetical protein | |
26 | UM146_16160 | 3352878..3353396 [-], 519 | 386605803 | hypothetical protein | TssD |
27 | UM146_16165 | 3354102..3354605 [+], 504 | 386605804 | type VI secretion protein | TssB |
28 | UM146_16170 | 3354628..3356112 [+], 1485 | 386605805 | type VI secretion protein EvpB | TssC |
29 | UM146_16175 | 3356117..3356542 [+], 426 | 386605806 | type VI secretion system lysozyme-like protein | TssE |
30 | UM146_16180 | 3356548..3358389 [+], 1842 | 386605807 | hypothetical protein | TssF |
31 | UM146_16185 | 3358353..3359402 [+], 1050 | 386605808 | hypothetical protein | TssG |
32 | UM146_16190 | 3359407..3360699 [+], 1293 | 386605809 | hypothetical protein | Fha |
33 | UM146_16195 | 3360696..3361220 [+], 525 | 386605810 | hypothetical protein | TssJ |
34 | UM146_16200 | 3361223..3362569 [+], 1347 | 386605811 | type VI secretion protein | TssK |
35 | UM146_16205 | 3362574..3363338 [+], 765 | 386605812 | hypothetical protein | TssL |
36 | UM146_16210 | 3363348..3366107 [+], 2760 | 386605813 | putative ATPase with chaperone activity | TssH |
37 | UM146_16215 | 3366104..3366847 [+], 744 | 386605814 | type VI secretion-associated protein | |
38 | UM146_16220 | 3366852..3368294 [+], 1443 | 386605815 | hypothetical protein | TssA |
39 | UM146_16225 | 3368314..3371841 [+], 3528 | 386605816 | hypothetical protein | TssM |
40 | UM146_16240 | 3373228..3373707 [+], 480 | 386605817 | hypothetical protein | TssD |
41 | UM146_16245 | 3374047..3374832 [-], 786 | 386605818 | putative aminopeptidase | |
42 | UM146_16250 | 3375370..3376110 [-], 741 | 386605819 | DNA polymerase III subunit epsilon | |
43 | UM146_16255 (rnhA) | 3376166..3376633 [+], 468 | 386605820 | ribonuclease H | |
44 | UM146_16260 | 3376630..3377352 [-], 723 | 386605821 | putative methyltransferase | |
45 | UM146_16265 | 3377386..3378141 [+], 756 | 386605822 | hydroxyacylglutathione hydrolase | |
46 | UM146_16270 (mltD) | 3378213..3378581 [+], 369 | 386605823 | membrane-bound lytic murein transglycosylase D | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein