I. Summary
SecReT6 ID63 insolico
StrainYersinia pseudotuberculosis IP32953
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTB14711766412..1766732 [+], 32151595808hypothetical protein 
2YPTB14721767062..1767520 [+], 45951595809(3R)-hydroxymyristoyl-ACP dehydratase 
3YPTB14731767510..1768793 [+], 1284515958103-ketoacyl-ACP synthase 
4YPTB14741768786..1769532 [+], 747515958113-ketoacyl-ACP reductase 
5YPTB14751769548..1770786 [+], 123951595812hydroxymethylglutaryl-CoA synthase 
6YPTB14761770779..1771498 [+], 72051595813enoyl-CoA hydratase 
7YPTB14771771491..1772252 [+], 76251595814polyketide biosynthesis enoyl-CoA hydratase 
8YPTB14781772255..1773043 [+], 789515958153-oxoacyl-ACP reductase 
9YPTB14791773130..1773570 [+], 44151595816hypothetical protein 
10YPTB14801773608..1773856 [+], 24951595817acyl carrier protein 
11YPTB14811773955..1774803 [+], 84951595818acyl transferase 
12YPTB14821774960..1775127 [+], 16851595819hypothetical protein 
13YPTB14831775792..1776292 [+], 50151595820hypothetical protein  TssB
14YPTB14841776335..1777885 [+], 155151595821hypothetical protein  TssC
15YPTB14851777897..1779249 [+], 135351595822hypothetical protein  TssK
16YPTB14861779246..1779932 [+], 68751595823hypothetical protein  TssL
17YPTB14871779932..1781668 [+], 173751595824OmpA family outer membrane protein  TagL
18YPTB14881781672..1782163 [+], 49251595825hypothetical protein  TssD
19YPTB1489 (clpB3)1782551..1785199 [+], 264951595826Clp ATPase  TssH
20YPTB14901785196..1787694 [+], 249951595827hypothetical protein  TssI
21YPTB14911787812..1789083 [+], 127251595828hypothetical protein 
22YPTB14921789090..1789482 [+], 39351595829lipoprotein 
23YPTB14931789798..1792500 [+], 270351595830hypothetical protein  TssI
24YPTB14941792503..1792919 [+], 41751595831hypothetical protein 
25YPTB14951792928..1794676 [+], 174951595832LysM domain-containing protein 
26YPTB14961794681..1795193 [+], 51351595833hypothetical protein 
27YPTB14971796147..1797205 [+], 105951595834hypothetical protein 
28YPTB14981797202..1800624 [+], 342351595835hypothetical protein  TssM
29YPTB14991800668..1802269 [+], 160251595836hypothetical protein  TssA
30YPTB15001802287..1803345 [+], 105951595837hypothetical protein  PAAR
31YPTB15011803345..1803815 [+], 47151595838hypothetical protein 
32YPTB15021804036..1805799 [+], 176451595839hypothetical protein  TssF
33YPTB15031805763..1806848 [+], 108651595840hypothetical protein  TssG
34YPTB15041806724..1807425 [+], 70251595841hypothetical protein  TssJ
35YPTB15051807425..1807877 [+], 45351595842hypothetical protein  TssE
36YPTB15061807902..1809269 [+], 136851595843hypothetical protein  TssA
37YPTB15071809481..1810104 [-], 62451595844hypothetical protein 
38YPTB1508 (ybiT)1810619..1812382 [+], 176451595845ABC transporter ATP-binding protein 
39YPTB15091812610..1813257 [+], 64851595846hypothetical protein 
40YPTB1510 (moeB)1813329..1814099 [-], 77151595847molybdopterin biosynthesis protein MoeB 
41YPTB1511 (cspD)1814101..1815375 [-], 127551595848molybdopterin biosynthesis protein MoeA 
42YPTB15121815910..1817220 [-], 131151595849heme-binding protein 
43YPTB15131817230..1817898 [-], 66951595850ABC transporter ATP-binding protein 
44YPTB15141817900..1819162 [-], 126351595851hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTB14881781672..1782163 [+], 49251595825hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation