SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	630
Strain	Escherichia coli W
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017635
Location	3101394..3136897
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ECW_m3021 (csdA)	3096575..3097780 [+], 1206	386610174	cysteine sulfinate desulfinase
2	ECW_m3022 (csdE)	3097780..3098223 [+], 444	386610175	Fe-S metabolism protein
3	ECW_m3023 (ygdL)	3098274..3099080 [-], 807	386610176	hypothetical protein
4	ECW_m3024 (mltA)	3099157..3100254 [-], 1098	386610177	membrane-bound lytic murein transglycosylase A
5	ECW_m3028	3101394..3101894 [+], 501	386610178	hypothetical protein	TssB
6	ECW_m3029	3101953..3103491 [+], 1539	386610179	hypothetical protein	TssC
7	ECW_m3030	3103509..3104846 [+], 1338	386610180	hypothetical protein	TssK
8	ECW_m3031	3104843..3105508 [+], 666	386610181	Type IV/VI secretion system protein, DotU family	TssL
9	ECW_m3032	3105521..3107173 [+], 1653	386610182	Putative outer membrane protein/OmpA domain protein	TagL
10	ECW_m3033	3107231..3107722 [+], 492	386610183	Secreted protein Hcp	TssD
11	ECW_m3034	3107913..3110558 [+], 2646	386610184	ClpA/ClpB family protein	TssH
12	ECW_m3035	3110570..3113056 [+], 2487	386610185	ImpA family type VI secretion-associated protein	TssI
13	ECW_m3036	3113058..3113909 [+], 852	386610186	hypothetical protein
14	ECW_m3037	3113899..3114435 [+], 537	386610187	hypothetical protein
15	ECW_m3039	3117469..3117891 [+], 423	386610188	hypothetical protein
16	ECW_m3040	3117893..3118444 [+], 552	386610189	hypothetical protein
17	ECW_m3041	3118522..3119736 [+], 1215	386610190	hypothetical protein
18	ECW_m3042	3119688..3123125 [+], 3438	386610191	hypothetical protein	TssM
19	ECW_m3044	3124732..3125649 [+], 918	386610192	Paar	PAAR
20	ECW_m3045	3126099..3126206 [+], 108	386610193	hypothetical protein
21	ECW_m3046	3126751..3128109 [+], 1359	386610194	type VI secretion-associated protein, family	TssA
22	ECW_m3047	3128115..3128591 [+], 477	386610195	hypothetical protein	PAAR
23	ECW_m3048	3128584..3129261 [-], 678	386610196	IS911 transposase ORF2
24	ECW_m3050	3129450..3129761 [-], 312	386610197	IS911 transposase ORF1
25	ECW_m3051	3129823..3130116 [+], 294	386610198	hypothetical protein
26	ECW_m3052	3130787..3131209 [+], 423	386610199	hypothetical protein
27	ECW_m3053	3131769..3133529 [+], 1761	386610200	hypothetical protein	TssF
28	ECW_m3054	3133493..3134572 [+], 1080	386610201	hypothetical protein	TssG
29	ECW_m3055	3134553..3135089 [+], 537	386610202	type VI secretion lipoprotein	TssJ
30	ECW_m3056	3135093..3135521 [+], 429	386610203	hypothetical protein	TssE
31	ECW_m3057	3135521..3136897 [+], 1377	386610204	hypothetical protein	TssA
32	ECW_m3058	3136962..3137510 [+], 549	386610205	hypothetical protein
33	ECW_m3059 (amiC)	3137856..3139109 [-], 1254	386610206	N-acetylmuramoyl-L-alanine amidase
34	ECW_m3060 (argA)	3139341..3140672 [+], 1332	386610207	fused acetylglutamate kinase-like protein (inactive)/amino acid N-acetyltransferase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ECW_m3033	3107231..3107722 [+], 492	386610183	Secreted protein Hcp	EC042_4529

Download FASTA format files

Proteins Genes

N/A