SecReT6
I. Summary
SecReT6 ID632 insolico
StrainEscherichia coli NA114
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017644
Location2913267..2943545
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111321111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECNA114_2849 (ygdI)2908559..2908786 [-], 228386620378hypothetical protein 
2ECNA114_28502908978..2910183 [+], 1206386620379hypothetical protein 
3ECNA114_28512910183..2910626 [+], 444386620380hypothetical protein 
4ECNA114_2852 (ygdL)2910677..2911477 [-], 801386620381hypothetical protein 
5ECNA114_2853 (mltA)2911560..2912627 [-], 1068386620382Membrane-bound lytic murein transglycosylase A 
6ECNA114_28542913267..2913767 [+], 501386620383hypothetical protein  TssB
7ECNA114_28552913826..2915364 [+], 1539386620384hypothetical protein  TssC
8ECNA114_28562915382..2916719 [+], 1338386620385hypothetical protein  TssK
9ECNA114_285612916716..2917381 [+], 666386620386hypothetical protein  TssL
10ECNA114_28572917394..2919046 [+], 1653386620387hypothetical protein  TagL
11ECNA114_28582919104..2919595 [+], 492386620388hypothetical protein  TssD
12ECNA114_28592919559..2919672 [-], 114386620389hypothetical protein 
13ECNA114_28602919786..2922422 [+], 2637386620390Clp ATPase  TssH
14ECNA114_28612922434..2925367 [+], 2934386620391hypothetical protein  TssI
15ECNA114_28622925389..2927005 [+], 1617386620392hypothetical protein  TssI
16ECNA114_28632927008..2927829 [+], 822386620393hypothetical protein 
17ECNA114_28642928397..2930265 [+], 1869386620394hypothetical protein 
18ECNA114_28652930371..2930643 [+], 273386620395hypothetical protein  TssI
19ECNA114_28662930809..2932023 [+], 1215386620396hypothetical protein 
20ECNA114_28672932080..2935478 [+], 3399386620397hypothetical protein  TssM
21ECNA114_28682935456..2937081 [+], 1626386620398hypothetical protein  TssA
22ECNA114_28692937087..2938289 [+], 1203386620399hypothetical protein  PAAR
23ECNA114_28702938417..2940177 [+], 1761386620400hypothetical protein  TssF
24ECNA114_287012940141..2941220 [+], 1080386620401hypothetical protein  TssG
25ECNA114_28712941201..2941737 [+], 537386620402hypothetical protein  TssJ
26ECNA114_28722941741..2942169 [+], 429386620403hypothetical protein  TssE
27ECNA114_28732942169..2943545 [+], 1377386620404hypothetical protein  TssA
28ECNA114_28742943736..2945208 [-], 1473386620405PTS system, maltose and glucose-specific IIBC component protein 
29ECNA114_28752945177..2946061 [-], 885386620406N-acetylmuramoyl-L-alanine amidase 
30ECNA114_28762946293..2947624 [+], 1332386620407N-acetylglutamate synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECNA114_28582919104..2919595 [+], 492386620388hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU