I. Summary
SecReT6 ID633 insolico
StrainEscherichia coli str. 'clone D i2'
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1i02_31033106703..3107944 [+], 1242386630550cysteine sulfinate desulfinase 
2i02_3104 (ygdK)3107944..3108387 [+], 444386630551hypothetical protein 
3i02_3105 (ygdL)3108438..3109244 [-], 807386630552hypothetical protein 
4i02_3106 (mltA)3109321..3110418 [-], 1098386630553murein transglycosylase A 
5i02_31073111538..3112059 [+], 522386630554hypothetical protein  TssB
6i02_31083112112..3113656 [+], 1545386630555hypothetical protein  TssC
7i02_31093113676..3115013 [+], 1338386630556hypothetical protein  TssK
8i02_31103115010..3115675 [+], 666386630557hypothetical protein  TssL
9i02_31113115688..3117340 [+], 1653386630558hypothetical protein  TagL
10i02_31123117398..3117889 [+], 492386630559secreted protein Hcp  TssD
11i02_31133118081..3120717 [+], 2637386630560ClpB protein  TssH
12i02_31143120717..3123191 [+], 2475386630561hypothetical protein  TssI
13i02_31153123206..3124030 [+], 825386630562hypothetical protein 
14i02_31163124027..3126003 [+], 1977386630563hypothetical protein 
15i02_31173126013..3126285 [+], 273386630564hypothetical protein  PAAR
16i02_31183126285..3127718 [+], 1434386630565hypothetical protein 
17i02_31193127890..3131063 [+], 3174386630566hypothetical protein  TssM
18i02_31203131029..3132666 [+], 1638386630567hypothetical protein  TssA
19i02_31213132700..3134460 [+], 1761386630568hypothetical protein  TssF
20i02_31223134424..3135503 [+], 1080386630569hypothetical protein  TssG
21i02_31233135484..3136020 [+], 537386630570hypothetical protein  TssJ
22i02_31243136024..3136452 [+], 429386630571hypothetical protein  TssE
23i02_31253136452..3137828 [+], 1377386630572hypothetical protein  TssA
24i02_31273138128..3139084 [-], 9573866305732-hydroxyacid dehydrogenase 
25i02_31283139147..3139743 [-], 597386630574phosphosugar isomerase 
26i02_31293139746..3140921 [-], 1176386630575Beta-cystathionase 
27i02_31303140921..3142501 [-], 1581386630576PTS system, maltose and glucose-specific IIABC 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1i02_31123117398..3117889 [+], 492386630559secreted protein Hcp EC042_4529

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Proteins        Genes