I. Summary

SecReT6 ID	634
Strain	Escherichia coli str. 'clone D i14'
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017652
Location	3111538..3137828
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	i14_3103	3106703..3107944 [+], 1242	386635470	cysteine sulfinate desulfinase
2	i14_3104 (ygdK)	3107944..3108387 [+], 444	386635471	hypothetical protein
3	i14_3105 (ygdL)	3108438..3109244 [-], 807	386635472	hypothetical protein
4	i14_3106 (mltA)	3109321..3110418 [-], 1098	386635473	murein transglycosylase A
5	i14_3107	3111538..3112059 [+], 522	386635474	hypothetical protein	TssB
6	i14_3108	3112112..3113656 [+], 1545	386635475	hypothetical protein	TssC
7	i14_3109	3113676..3115013 [+], 1338	386635476	hypothetical protein	TssK
8	i14_3110	3115010..3115675 [+], 666	386635477	hypothetical protein	TssL
9	i14_3111	3115688..3117340 [+], 1653	386635478	hypothetical protein	TagL
10	i14_3112	3117398..3117889 [+], 492	386635479	secreted protein Hcp	TssD
11	i14_3113	3118081..3120717 [+], 2637	386635480	ClpB protein	TssH
12	i14_3114	3120717..3123191 [+], 2475	386635481	hypothetical protein	TssI
13	i14_3115	3123206..3124030 [+], 825	386635482	hypothetical protein
14	i14_3116	3124027..3126003 [+], 1977	386635483	hypothetical protein
15	i14_3117	3126013..3126285 [+], 273	386635484	hypothetical protein	PAAR
16	i14_3118	3126285..3127718 [+], 1434	386635485	hypothetical protein
17	i14_3119	3127890..3131063 [+], 3174	386635486	hypothetical protein	TssM
18	i14_3120	3131029..3132666 [+], 1638	386635487	hypothetical protein	TssA
19	i14_3121	3132700..3134460 [+], 1761	386635488	hypothetical protein	TssF
20	i14_3122	3134424..3135503 [+], 1080	386635489	hypothetical protein	TssG
21	i14_3123	3135484..3136020 [+], 537	386635490	hypothetical protein	TssJ
22	i14_3124	3136024..3136452 [+], 429	386635491	hypothetical protein	TssE
23	i14_3125	3136452..3137828 [+], 1377	386635492	hypothetical protein	TssA
24	i14_3127	3138128..3139084 [-], 957	386635493	2-hydroxyacid dehydrogenase
25	i14_3128	3139147..3139743 [-], 597	386635494	phosphosugar isomerase
26	i14_3129	3139746..3140921 [-], 1176	386635495	Beta-cystathionase
27	i14_3130	3140921..3142501 [-], 1581	386635496	PTS system, maltose and glucose-specific IIABC

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	i14_3112	3117398..3117889 [+], 492	386635479	secreted protein Hcp	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

N/A