I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | KO11_01010 (yafS) | 235508..236230 [+], 723 | 386698706 | putative S-adenosyl-L-methionine-dependent methyltransferase | |
2 | KO11_01015 (rnhA) | 236227..236694 [-], 468 | 386698707 | ribonuclease H | |
3 | KO11_01020 (dnaQ) | 236759..237490 [+], 732 | 386698708 | DNA polymerase III subunit epsilon | |
4 | KO11_01025 (yafT) | 238030..238815 [+], 786 | 386698709 | putative aminopeptidase | |
5 | KO11_01030 | 238952..239431 [-], 480 | 386698710 | hypothetical protein | |
6 | KO11_01035 | 239441..240355 [-], 915 | 386698711 | hypothetical protein | |
7 | KO11_01040 | 240399..240881 [-], 483 | 386698712 | Hcp-like protein | TssD |
8 | KO11_01045 | 240905..242257 [-], 1353 | 386698713 | hypothetical protein | TssA |
9 | KO11_01050 | 242268..245732 [-], 3465 | 386698714 | IcmF-like protein | TssM |
10 | KO11_01055 | 245811..247223 [-], 1413 | 386698715 | hypothetical protein | TssA |
11 | KO11_01060 | 247228..247971 [-], 744 | 386698716 | hypothetical protein | |
12 | KO11_01065 | 247968..250775 [-], 2808 | 386698717 | putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity | TssH |
13 | KO11_01070 | 250784..251545 [-], 762 | 386698718 | putative membrane protein Aec26 | TssL |
14 | KO11_01075 | 251550..252881 [-], 1332 | 386698719 | hypothetical protein | TssK |
15 | KO11_01080 | 252884..253408 [-], 525 | 386698720 | putative lipoprotein | TssJ |
16 | KO11_01085 | 253405..254685 [-], 1281 | 386698721 | type VI secretion system protein ImpI | Fha |
17 | KO11_01090 | 254710..255792 [-], 1083 | 386698722 | hypothetical protein | TssG |
18 | KO11_01095 | 255756..257606 [-], 1851 | 386698723 | type VI secretion system protein ImpG | TssF |
19 | KO11_01100 | 257610..258023 [-], 414 | 386698724 | hypothetical protein | TssE |
20 | KO11_01105 | 258030..259505 [-], 1476 | 386698725 | hypothetical protein | TssC |
21 | KO11_01110 | 259556..259780 [-], 225 | 386698726 | hypothetical protein | TssC |
22 | KO11_01115 | 259815..260315 [-], 501 | 386698727 | hypothetical protein | TssB |
23 | KO11_01120 | 260743..260886 [+], 144 | 386698728 | hypothetical protein | |
24 | KO11_01125 | 261013..261531 [+], 519 | 386698729 | hypothetical protein | TssD |
25 | KO11_01130 | 261741..263882 [+], 2142 | 386698730 | VgrG protein | TssI |
26 | KO11_01135 (rhsW1) | 263958..268007 [+], 4050 | 386698731 | Rhs core protein | PAAR |
27 | KO11_01140 | 267967..268404 [+], 438 | 386698732 | hypothetical protein | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.