I. Summary
SecReT6 ID636 insolico
StrainEscherichia coli KO11FL
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KO11_01010 (yafS)235508..236230 [+], 723386698706putative S-adenosyl-L-methionine-dependent methyltransferase 
2KO11_01015 (rnhA)236227..236694 [-], 468386698707ribonuclease H 
3KO11_01020 (dnaQ)236759..237490 [+], 732386698708DNA polymerase III subunit epsilon 
4KO11_01025 (yafT)238030..238815 [+], 786386698709putative aminopeptidase 
5KO11_01030238952..239431 [-], 480386698710hypothetical protein 
6KO11_01035239441..240355 [-], 915386698711hypothetical protein 
7KO11_01040240399..240881 [-], 483386698712Hcp-like protein  TssD
8KO11_01045240905..242257 [-], 1353386698713hypothetical protein  TssA
9KO11_01050242268..245732 [-], 3465386698714IcmF-like protein  TssM
10KO11_01055245811..247223 [-], 1413386698715hypothetical protein  TssA
11KO11_01060247228..247971 [-], 744386698716hypothetical protein 
12KO11_01065247968..250775 [-], 2808386698717putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
13KO11_01070250784..251545 [-], 762386698718putative membrane protein Aec26  TssL
14KO11_01075251550..252881 [-], 1332386698719hypothetical protein  TssK
15KO11_01080252884..253408 [-], 525386698720putative lipoprotein  TssJ
16KO11_01085253405..254685 [-], 1281386698721type VI secretion system protein ImpI  Fha
17KO11_01090254710..255792 [-], 1083386698722hypothetical protein  TssG
18KO11_01095255756..257606 [-], 1851386698723type VI secretion system protein ImpG  TssF
19KO11_01100257610..258023 [-], 414386698724hypothetical protein  TssE
20KO11_01105258030..259505 [-], 1476386698725hypothetical protein  TssC
21KO11_01110259556..259780 [-], 225386698726hypothetical protein  TssC
22KO11_01115259815..260315 [-], 501386698727hypothetical protein  TssB
23KO11_01120260743..260886 [+], 144386698728hypothetical protein 
24KO11_01125261013..261531 [+], 519386698729hypothetical protein  TssD
25KO11_01130261741..263882 [+], 2142386698730VgrG protein  TssI
26KO11_01135 (rhsW1)263958..268007 [+], 4050386698731Rhs core protein  PAAR
27KO11_01140267967..268404 [+], 438386698732hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KO11_01125261013..261531 [+], 519386698729hypothetical protein ABG57132

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Proteins        Genes