I. Summary

SecReT6 ID	636
Strain	Escherichia coli KO11FL
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017660
Location	240399..263882
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KO11_01010 (yafS)	235508..236230 [+], 723	386698706	putative S-adenosyl-L-methionine-dependent methyltransferase
2	KO11_01015 (rnhA)	236227..236694 [-], 468	386698707	ribonuclease H
3	KO11_01020 (dnaQ)	236759..237490 [+], 732	386698708	DNA polymerase III subunit epsilon
4	KO11_01025 (yafT)	238030..238815 [+], 786	386698709	putative aminopeptidase
5	KO11_01030	238952..239431 [-], 480	386698710	hypothetical protein
6	KO11_01035	239441..240355 [-], 915	386698711	hypothetical protein
7	KO11_01040	240399..240881 [-], 483	386698712	Hcp-like protein	TssD
8	KO11_01045	240905..242257 [-], 1353	386698713	hypothetical protein	TssA
9	KO11_01050	242268..245732 [-], 3465	386698714	IcmF-like protein	TssM
10	KO11_01055	245811..247223 [-], 1413	386698715	hypothetical protein	TssA
11	KO11_01060	247228..247971 [-], 744	386698716	hypothetical protein
12	KO11_01065	247968..250775 [-], 2808	386698717	putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity	TssH
13	KO11_01070	250784..251545 [-], 762	386698718	putative membrane protein Aec26	TssL
14	KO11_01075	251550..252881 [-], 1332	386698719	hypothetical protein	TssK
15	KO11_01080	252884..253408 [-], 525	386698720	putative lipoprotein	TssJ
16	KO11_01085	253405..254685 [-], 1281	386698721	type VI secretion system protein ImpI	Fha
17	KO11_01090	254710..255792 [-], 1083	386698722	hypothetical protein	TssG
18	KO11_01095	255756..257606 [-], 1851	386698723	type VI secretion system protein ImpG	TssF
19	KO11_01100	257610..258023 [-], 414	386698724	hypothetical protein	TssE
20	KO11_01105	258030..259505 [-], 1476	386698725	hypothetical protein	TssC
21	KO11_01110	259556..259780 [-], 225	386698726	hypothetical protein	TssC
22	KO11_01115	259815..260315 [-], 501	386698727	hypothetical protein	TssB
23	KO11_01120	260743..260886 [+], 144	386698728	hypothetical protein
24	KO11_01125	261013..261531 [+], 519	386698729	hypothetical protein	TssD
25	KO11_01130	261741..263882 [+], 2142	386698730	VgrG protein	TssI
26	KO11_01135 (rhsW1)	263958..268007 [+], 4050	386698731	Rhs core protein	PAAR
27	KO11_01140	267967..268404 [+], 438	386698732	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ABG57132

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	KO11_01125	261013..261531 [+], 519	386698729	hypothetical protein	ABG57132

Download FASTA format files

Proteins        Genes

N/A

N/A