I. Summary
SecReT6 ID638 insolico
StrainEscherichia coli W
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1WFL_01010 (yafS)235508..236230 [+], 723386707936putative S-adenosyl-L-methionine-dependent methyltransferase 
2WFL_01015 (rnhA)236227..236694 [-], 468386707937ribonuclease H 
3WFL_01020 (dnaQ)236750..237490 [+], 741386707938DNA polymerase III subunit epsilon 
4WFL_01025 (yafT)238030..238815 [+], 786386707939putative aminopeptidase 
5WFL_01030238952..239431 [-], 480386707940hypothetical protein 
6WFL_01035239441..240355 [-], 915386707941hypothetical protein 
7WFL_01040240399..240881 [-], 483386707942Hcp-like protein  TssD
8WFL_01045240905..242257 [-], 1353386707943hypothetical protein  TssA
9WFL_01050242268..245732 [-], 3465386707944IcmF-like protein  TssM
10WFL_01055245811..247223 [-], 1413386707945hypothetical protein  TssA
11WFL_01060247228..247971 [-], 744386707946hypothetical protein 
12WFL_01065247968..250775 [-], 2808386707947putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
13WFL_01070250784..251545 [-], 762386707948putative membrane protein Aec26  TssL
14WFL_01075251550..252881 [-], 1332386707949hypothetical protein  TssK
15WFL_01080252884..253408 [-], 525386707950putative lipoprotein  TssJ
16WFL_01085253405..254685 [-], 1281386707951type VI secretion system protein ImpI  Fha
17WFL_01090254710..255792 [-], 1083386707952hypothetical protein  TssG
18WFL_01095255756..257606 [-], 1851386707953type VI secretion system protein ImpG  TssF
19WFL_01100257610..258023 [-], 414386707954hypothetical protein  TssE
20WFL_01105258030..259505 [-], 1476386707955hypothetical protein  TssC
21WFL_01110259556..259780 [-], 225386707956hypothetical protein  TssC
22WFL_01115259815..260315 [-], 501386707957hypothetical protein  TssB
23WFL_01120260743..260886 [+], 144386707958hypothetical protein 
24WFL_01125261013..261531 [+], 519386707959hypothetical protein  TssD
25WFL_01130261741..263882 [+], 2142386707960VgrG protein  TssI
26WFL_01135 (rhsW1)263958..268007 [+], 4050386707961Rhs core protein  PAAR
27WFL_01140267997..268404 [+], 408386707962hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1WFL_01125261013..261531 [+], 519386707959hypothetical protein ABG57132

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Proteins        Genes