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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPTB2645 (ccmE) | 3125049..3125543 [-], 495 | 51596964 | cytochrome c-type biogenesis protein CcmE | |
2 | YPTB2646 (ccmD) | 3125540..3125890 [-], 351 | 51596965 | heme exporter protein D | |
3 | YPTB2647 (ccmC) | 3125887..3126624 [-], 738 | 51596966 | ABC type heme exporter, permease subunit ccmC | |
4 | YPTB2648 (ccmB) | 3126687..3127346 [-], 660 | 51596967 | heme ABC transporter permease subunit CcmB | |
5 | YPTB2649 (ccmA) | 3127316..3127972 [-], 657 | 51596968 | cytochrome c biogenesis protein CcmA | |
6 | YPTB2650 | 3128417..3128884 [-], 468 | 51596969 | hypothetical protein | |
7 | YPTB2651 (lemA) | 3129501..3130043 [+], 543 | 51596970 | hypothetical protein | |
8 | YPTB2652 | 3129988..3132087 [+], 2100 | 51596971 | hypothetical protein | |
9 | YPTB2653 | 3132463..3132804 [+], 342 | 51596972 | hypothetical protein | |
10 | YPTB2654 | 3132879..3133244 [-], 366 | 51596973 | hypothetical protein | |
11 | YPTB2655 | 3133251..3133730 [-], 480 | 51596974 | hypothetical protein | TssE |
12 | YPTB2656 | 3133795..3134601 [-], 807 | 51596975 | hypothetical protein | TagJ |
13 | YPTB2657 | 3134621..3135469 [-], 849 | 51596976 | hypothetical protein | |
14 | YPTB2658 | 3135469..3135729 [-], 261 | 51596977 | hypothetical protein | PAAR |
15 | YPTB2659 | 3135809..3138721 [-], 2913 | 51596978 | hypothetical protein | TssI |
16 | YPTB2660 | 3139015..3142842 [-], 3828 | 51596979 | hypothetical protein | TssM |
17 | YPTB2661 | 3142851..3144227 [-], 1377 | 51596980 | OmpA/MotB family protein | TssL |
18 | YPTB2662 | 3144224..3145573 [-], 1350 | 51596981 | hypothetical protein | TssK |
19 | YPTB2663 | 3145577..3146137 [-], 561 | 51596982 | hypothetical protein | TssJ |
20 | YPTB2664 | 3146390..3146959 [-], 570 | 51596983 | hypothetical protein | TssD |
21 | YPTB2665 | 3147208..3148710 [-], 1503 | 51596984 | hypothetical protein | TssC |
22 | YPTB2666 | 3148734..3149258 [-], 525 | 51596985 | hypothetical protein | TssB |
23 | YPTB2667 | 3149364..3149972 [-], 609 | 51596986 | fimbrial protein | |
24 | YPTB2668 | 3149957..3152668 [-], 2712 | 51596987 | outer membrane fimbrial usher porin | |
25 | YPTB2669 | 3152757..3153518 [-], 762 | 51596988 | pili chaperone protein | |
26 | YPTB2670 | 3153675..3154220 [-], 546 | 51596989 | frimbrial protein | |
27 | YPTB2671 (clpB5) | 3154431..3157088 [-], 2658 | 51596990 | Clp ATPase | TssH |
28 | YPTB2672 | 3157872..3159752 [+], 1881 | 51596991 | hypothetical protein | TssF |
29 | YPTB2673 | 3159752..3160777 [+], 1026 | 51596992 | hypothetical protein | TssG |
30 | YPTB2674 | 3160876..3162069 [+], 1194 | 51596993 | hypothetical protein | TssA |
31 | YPTB2675 | 3162076..3163107 [+], 1032 | 51596994 | fimbrial protein | |
32 | YPTB2676 | 3163147..3164484 [+], 1338 | 51596995 | hypothetical protein | |
33 | YPTB2677 | 3164481..3165182 [+], 702 | 51596996 | hypothetical protein | |
34 | YPTB2678 | 3165183..3166865 [+], 1683 | 51596997 | OMPA family outer membrane porin | TagL |
35 | YPTB2679 | 3166862..3167344 [+], 483 | 51596998 | hypothetical protein | |
36 | YPTB2680 | 3167717..3168319 [-], 603 | 51596999 | LuxR family transcriptional regulator | |
37 | YPTB2681 (mltB) | 3169588..3170682 [-], 1095 | 51597000 | murein hydrolase B | |
38 | YPTB2682 (sfuA) | 3171011..3172030 [+], 1020 | 51597001 | iron(III)-ABC transporter substrate-binding protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein