I. Summary
SecReT6 ID641 insolico
StrainHelicobacter cinaedi PAGU611
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HCN_14141412004..1412252 [-], 249386762093hypothetical protein 
2HCN_14151412612..1412767 [-], 156386762094hypothetical protein 
3HCN_14161412784..1414850 [-], 2067386762095hypothetical protein 
4HCN_14171414843..1415289 [-], 447386762096hypothetical protein 
5HCN_14181415270..1415731 [-], 462386762097hypothetical protein 
6HCN_14191415733..1415924 [-], 192386762098hypothetical protein 
7HCN_14201415885..1416274 [-], 390386762099hypothetical protein 
8HCN_14211416274..1416684 [-], 411386762100hypothetical protein 
9HCN_14221416768..1417670 [-], 903402783618type VI secretion protein VC_A0111 family  TssG
10HCN_14231417667..1419391 [-], 1725386762101type VI secretion protein VC_A0110 family  TssF
11HCN_14241419391..1419783 [-], 393402783619hypothetical protein  TssE
12HCN_14251419786..1421240 [-], 1455386762102type VI secretion protein EvpB/VC_A0108 family  TssC
13HCN_14261421249..1421734 [-], 486386762103type VI secretion protein VC_A0107 family  TssB
14HCN_14271421797..1423044 [-], 1248402783620nucleobase:cation symporter 
15HCN_14281423204..1423659 [+], 456386762104type VI secretion lipoprotein  TssJ
16HCN_14291423676..1425076 [+], 1401386762105type VI secretion protein VC_A0114 family  TssK
17HCN_14301425086..1425853 [+], 768402783621type IV/VI secretion system protein  TssL
18HCN_14311426367..1426804 [-], 438386762106hypothetical protein 
19HCN_14321426909..1427169 [-], 261386762107hypothetical protein 
20HCN_14331427153..1427722 [-], 570386762108hypothetical protein 
21HCN_14341427753..1428124 [-], 372386762109hypothetical protein 
22HCN_14351428139..1428504 [-], 366386762110hypothetical protein 
23HCN_14361428501..1428701 [-], 201386762111hypothetical protein 
24HCN_14371428620..1429807 [-], 1188386762112transcriptional regulator 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1HCN_13621367652..1368167 [+], 516402783617secreted protein Hcp HH0243

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Proteins        Genes
(1) Goto T et al. (2012). Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia. J Bacteriol. 194(14):3744-5. [PudMed:22740670] in_silico
in_silico This literature contains bioinformatics investigation