SecReT6
I. Summary
SecReT6 ID644 insolico
StrainBurkholderia pseudomallei 1026b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017832
Location88329..146666
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BP1026B_II007984631..85191 [+], 561386863813ABC transporter membrane protein 
2BP1026B_II008086029..87060 [+], 1032386863814ABC transport system, exported substrate-binding protein 
3BP1026B_II008187703..88008 [+], 306386863815H-NS histone family protein 
4BP1026B_II008288329..91115 [+], 2787386863816Rhs element Vgr protein  TssI
5BP1026B_II008391129..93369 [+], 2241386863817hypothetical protein  BTH_I3226 (e)
6BP1026B_II008493658..95046 [+], 1389386863818hypothetical protein 
7BP1026B_II008595056..95319 [+], 264386863819PAAR motif-containing protein  PAAR
8BP1026B_II008695734..96153 [-], 420386863820hypothetical protein 
9BP1026B_II008796173..96499 [-], 327386863821thioredoxin 
10BP1026B_II008896956..97663 [+], 708386863822hypothetical protein 
11BP1026B_II008998249..98788 [-], 540386863823hypothetical protein 
12BP1026B_II009098995..100590 [-], 1596386863824cytochrome c oxidase polypeptide I 
13BP1026B_II0091100995..101465 [+], 471386863825hypothetical protein 
14BP1026B_II0092101740..103197 [-], 1458386863826hypothetical protein 
15BP1026B_II0093103557..104021 [+], 465386863827hypothetical protein 
16BP1026B_II0094104190..104357 [-], 168386863828hypothetical protein 
17BP1026B_II0096107090..108577 [-], 1488386863829hypothetical protein 
18BP1026B_II0097108839..109291 [-], 453386863830hypothetical protein 
19BP1026B_II0098109978..110523 [+], 546386863831frimbrial protein 
20BP1026B_II0099110588..111325 [+], 738386863832chaperone protein EcpD precursor 
21BP1026B_II0100111666..114182 [+], 2517386863833outer membrane usher protein 
22BP1026B_II0101114084..114302 [-], 219386863834hypothetical protein 
23BP1026B_II0102114325..114747 [+], 423386863835major fimbrial subunit protein 
24BP1026B_II0103 (tssL-2a)114779..115468 [+], 690386863836type VI secretion system  TssL
25BP1026B_II0104 (tagL-2)115471..117147 [+], 1677386863837type VI secretion system  TagL
26BP1026B_II0105 (tssB-2)117537..118076 [+], 540386863838type VI secretion system  TssB
27BP1026B_II0106 (tssC-2)118110..119609 [+], 1500386863839type VI secretion system  TssC
28BP1026B_II0107 (hcp-2)119809..120291 [+], 483386863840type VI secretion system  TssD
29BP1026B_II0108 (tssJ-2)120419..120961 [+], 543386863841type VI secretion system  TssJ
30BP1026B_II0109 (tssK-2)120967..122316 [+], 1350386863842type VI secretion system  TssK
31BP1026B_II0110 (tssL-2b)122313..123614 [+], 1302386863843type VI secretion system  TssL
32BP1026B_II0111 (tssM-2)123629..127537 [+], 3909386863844type VI secretion system  TssM
33BP1026B_II0112127727..128296 [+], 570386863845hypothetical protein 
34BP1026B_II0113 (vgrG-2)128394..131000 [+], 2607386863846type VI secretion system  TssI
35BP1026B_II0114131075..131344 [+], 270386863847Rhs family protein  PAAR
36BP1026B_II0115 (rhs-2)131357..134809 [+], 3453386863848Rhs1 protein 
37BP1026B_II0116134702..136060 [-], 1359386863849hypothetical protein 
38BP1026B_II0117136093..137121 [-], 1029386863850hypothetical protein 
39BP1026B_II0118 (tssA-2)137176..138246 [-], 1071386863851type VI secretion system  TssA
40BP1026B_II0119 (tssG-2)138265..139314 [-], 1050386863852type VI secretion system  TssG
41BP1026B_II0120 (tssF-2)139311..141191 [-], 1881386863853type VI secretion system  TssF
42BP1026B_II0121 (tssE-2)141193..141711 [-], 519386863854type VI secretion system  TssE
43BP1026B_II0122 (tagJ-2)141698..142552 [-], 855386863855type VI secretion system  TagJ
44BP1026B_II0124 (tagK-2)142536..143093 [-], 558386863856type VI secretion system 
45BP1026B_II0123143112..143576 [+], 465386863857hypothetical protein 
46BP1026B_II0125 (clpV-2)144021..146666 [+], 2646386863858type VI secretion system  TssH
47BP1026B_II0126147057..150101 [-], 3045386863859two-component system sensor protein 
48BP1026B_II0128150431..150748 [+], 318386863860hypothetical protein 
49BP1026B_II0129150772..151032 [+], 261386863861hypothetical protein 
50BP1026B_II0130150886..151080 [-], 195386863862hypothetical protein 
51BP1026B_II0131151019..151309 [-], 291386863863hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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Genomics & Bioinformatics Group in MML, SJTU