SecReT6
I. Summary
SecReT6 ID646 insolico
StrainBurkholderia pseudomallei 1026b
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_017832
Location706900..733217
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
14
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BP1026B_II0568702611..703300 [-], 690386864282CDP-alcohol phosphatidyltransferase 
2BP1026B_II0569703665..705179 [+], 1515386864283acetyl-CoA hydrolase/transferase 
3BP1026B_II0571706647..706784 [-], 138386864284hypothetical protein 
4BP1026B_II0572 (tssA-4)706900..707838 [+], 939386864285type VI secretion system  TssA
5BP1026B_II0573 (tssB-4)707872..708420 [+], 549386864286type VI secretion system  TssB
6BP1026B_II0574 (tssC-4)708417..709928 [+], 1512386864287type VI secretion system  TssC
7BP1026B_II0575 (hcp-4)710072..710599 [+], 528386864288type VI secretion system  TssD
8BP1026B_II0576 (tssE-4)710679..711110 [+], 432386864289type VI secretion system  TssE
9BP1026B_II0577 (tssF-4)711124..712986 [+], 1863386864290type VI secretion system  TssF
10BP1026B_II0578 (tssG-4)712983..713972 [+], 990386864291type VI secretion system  TssG
11BP1026B_II0579 (clpV-4)713975..716845 [+], 2871386864292type VI secretion system  TssH
12BP1026B_II0580 (vgrG-4a)716836..719124 [+], 2289386864293type VI secretion system  TssI
13BP1026B_II0581 (vgrG-4b)719290..721578 [+], 2289386864294type VI secretion system  TssI
14BP1026B_II0582 (tagAB-4)721582..723798 [+], 2217386864295type VI secretion system 
15BP1026B_II0583 (tagB-4)723798..724868 [+], 1071386864296type VI secretion system 
16BP1026B_II0584 (tagC-4)724871..725587 [+], 717386864297type VI secretion system 
17BP1026B_II0586 (tagD-4)725630..726019 [+], 390386864298type VI secretion system 
18BP1026B_II0585 (tssJ-4)726037..726618 [+], 582386864299type VI secretion system  TssJ
19BP1026B_II0587 (tssK-4)726615..727976 [+], 1362386864300type VI secretion system  TssK
20BP1026B_II0588 (tssL-4)728002..729717 [+], 1716386864301type VI secretion system  TssL
21BP1026B_II0589 (tssM-4)729714..733217 [+], 3504386864302type VI secretion system  TssM
22BP1026B_II0590733276..733635 [+], 360386864303hypothetical protein 
23BP1026B_II0591733790..734083 [+], 294386864304hypothetical protein 
24BP1026B_II0592734308..734679 [+], 372386864305hypothetical protein 
25BP1026B_II0593735230..736129 [+], 900386864306rhamnosyltransferase 1, subunit A 
26BP1026B_II0594736288..737682 [+], 1395386864307rhamnosyltransferase I, subunit B 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BP1026B_II0575(hcp-4)710072..710599 [+], 528386864288type VI secretion system YPK_3563

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU