I. Summary

SecReT6 ID	648
Strain	Burkholderia pseudomallei 1026b
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_017832
Location	2795826..2819113
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BP1026B_II2250	2792307..2793029 [-], 723	386865911	transposase
2	BP1026B_II2252	2793290..2795170 [-], 1881	386865912	YD repeat/RHS repeat protein
3	BP1026B_II2253	2795100..2795768 [-], 669	386865913	hypothetical protein
4	BP1026B_II2254 (vgrG-6)	2795826..2798030 [-], 2205	386865914	type VI secretion system	TssI
5	BP1026B_II2255 (clpV-6)	2798027..2800693 [-], 2667	386865915	type VI secretion system	TssH
6	BP1026B_II2256 (tssG-6)	2800706..2802118 [-], 1413	386865916	type VI secretion system	TssG
7	BP1026B_II2257 (tssF-6)	2802148..2804019 [-], 1872	386865917	type VI secretion system	TssF
8	BP1026B_II2258 (tssE-6)	2804024..2804560 [-], 537	386865918	type VI secretion system	TssE
9	BP1026B_II2259 (hcp-6)	2804591..2805082 [-], 492	386865919	type VI secretion system	TssD
10	BP1026B_II2260 (tssC-6)	2805142..2806650 [-], 1509	386865920	type VI secretion system	TssC
11	BP1026B_II2261 (tssB-6)	2806643..2807221 [-], 579	386865921	type VI secretion system	TssB
12	BP1026B_II2262 (tssA-6)	2807284..2808363 [-], 1080	386865922	type VI secretion system	TssA
13	BP1026B_II2263 (ppkA-6)	2808416..2811025 [-], 2610	386865923	type VI secretion system
14	BP1026B_II2264 (tagF-6)	2811236..2812177 [-], 942	386865924	type VI secretion system
15	BP1026B_II2265 (tssM-6)	2812174..2815803 [-], 3630	386865925	type VI secretion system	TssM
16	BP1026B_II2266 (tssL-6)	2815806..2817122 [-], 1317	386865926	type VI secretion system	TssL
17	BP1026B_II2267 (tssK-6)	2817138..2818541 [-], 1404	386865927	type VI secretion system	TssK
18	BP1026B_II2268 (tssJ-6)	2818538..2819113 [-], 576	386865928	type VI secretion system	TssJ
19	BP1026B_II2269 (tagI-6)	2819564..2820097 [+], 534	386865929	type VI secretion system
20	BP1026B_II2270 (fha-6)	2820152..2821588 [+], 1437	386865930	type VI secretion system	Fha
21	BP1026B_II2271	2821631..2823529 [-], 1899	386865931	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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