I. Summary
SecReT6 ID65 insolico
StrainYersinia pseudotuberculosis IP32953
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTB3236 (insA)3812320..3812595 [-], 27651597543insertion sequence protein 
2YPTB32373812691..3813458 [-], 76851597544hypothetical protein 
3YPTB32383813445..3815742 [-], 229851597545hypothetical protein 
4YPTB3242 (insA)3817314..3817589 [-], 27651597546insertion sequence protein 
5YPTB32433817986..3818486 [-], 50151597547hypothetical protein 
6YPTB32443818487..3820709 [-], 222351597548hypothetical protein 
7YPTB32453820724..3823072 [-], 234951597549hypothetical protein  TssI
8YPTB3246 (clpB3)3823069..3825717 [-], 264951597550Clp ATPase  TssH
9YPTB32473826135..3826626 [-], 49251597551hypothetical protein  TssD
10YPTB32483826630..3828366 [-], 173751597552PAL/OmpA family membrane protein  TagL
11YPTB32493828366..3829052 [-], 68751597553hypothetical protein  TssL
12YPTB32503829049..3830401 [-], 135351597554hypothetical protein  TssK
13YPTB32513830413..3831957 [-], 154551597555hypothetical protein  TssC
14YPTB32523832006..3832506 [-], 50151597556hypothetical protein  TssB
15YPTB3255 (insA)3834445..3834708 [-], 26451597557insertion element protein 
16YPTB32563834776..3835171 [-], 39651597558lipoprotein 
17YPTB32573835622..3836272 [-], 65151597559hypothetical protein 
18YPTB3258 (yspI)3837443..3838093 [+], 65151597560N-acylhomoserine lactone synthase 
19YPTB3259 (yspR)3838074..3838817 [-], 74451597561quorum-sensing transcriptional regulator 
20YPTB32603839379..3840737 [+], 135951597562hypothetical protein 
21YPTB32613841125..3841958 [+], 83451597563hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTB32473826135..3826626 [-], 49251597551hypothetical protein EC042_4529

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation