I. Summary

SecReT6 ID	651
Strain	Acinetobacter baumannii MDR-TJ
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017847
Location	2480236..2499647
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ABTJ_02394	2475310..2476488 [-], 1179	387124405	cyanate permease
2	ABTJ_02395	2476488..2476970 [-], 483	387124406	cytosine/adenosine deaminase
3	ABTJ_02396	2476986..2477654 [-], 669	387124407	ankyrin repeat-containing protein
4	ABTJ_02397	2477806..2478657 [+], 852	387124408	transcriptional regulator
5	ABTJ_02398	2478660..2479613 [-], 954	387124409	D-alanyl-D-alanine carboxypeptidase
6	ABTJ_02399	2479621..2480223 [-], 603	387124410	hypothetical protein
7	ABTJ_02400	2480236..2481042 [-], 807	387124411	DotU family type IV / VI secretion system protein	TssL
8	ABTJ_02401	2481060..2482424 [-], 1365	387124412	type VI secretion protein	TssK
9	ABTJ_02402	2482441..2483535 [-], 1095	387124413	type VI secretion-associated protein, ImpA family	TssA
10	ABTJ_02403	2483559..2486237 [-], 2679	387124414	type VI secretion ATPase, ClpV1 family	TssH
11	ABTJ_02404	2486460..2486723 [-], 264	387124415	hypothetical protein	PAAR
12	ABTJ_02405	2486740..2487507 [-], 768	387124416	outer membrane protein/peptidoglycan-associated (lipo)protein	TagL
13	ABTJ_02406	2487510..2488505 [-], 996	387124417	type VI secretion-associated protein
14	ABTJ_02407	2488507..2492331 [-], 3825	387124418	type VI secretion protein IcmF	TssM
15	ABTJ_02408	2492362..2493774 [-], 1413	387124419	hypothetical protein
16	ABTJ_02409	2493771..2494769 [-], 999	387124420	type VI secretion protein	TssG
17	ABTJ_02410	2494733..2496544 [-], 1812	387124421	type VI secretion protein	TssF
18	ABTJ_02411	2496561..2497037 [-], 477	387124422	type VI secretion system lysozyme-like protein	TssE
19	ABTJ_02412	2497117..2497620 [-], 504	387124423	type VI secretion system effector	TssD
20	ABTJ_02413	2497670..2499151 [-], 1482	387124424	type VI secretion protein EvpB	TssC
21	ABTJ_02414	2499144..2499647 [-], 504	387124425	type VI secretion protein	TssB
22	ABTJ_02415	2499664..2500347 [-], 684	387124426	hypothetical protein
23	ABTJ_02416	2501445..2501846 [+], 402	387124427	hypothetical protein
24	ABTJ_02417	2501942..2502886 [+], 945	387124428	nitrate/sulfonate/bicarbonate ABC transporter permease
25	ABTJ_02418	2502886..2503767 [+], 882	387124429	nitrate/sulfonate/bicarbonate ABC transporter ATPase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

A1S_1296

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ABTJ_02412	2497117..2497620 [-], 504	387124423	type VI secretion system effector	A1S_1296

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Proteins        Genes

N/A

N/A