SecReT6
I. Summary
SecReT6 ID651 insolico
StrainAcinetobacter baumannii MDR-TJ
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017847
Location2480236..2499647
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABTJ_RS117952475310..2476488 [-], 1179446736559cyanate transporter 
2ABTJ_RS118002476488..2476970 [-], 483446569383nucleoside deaminase 
3ABTJ_RS118052476986..2477633 [-], 6481190339449ankyrin repeat domain-containing protein 
4ABTJ_RS118102477806..2478657 [+], 852446382329LysR family transcriptional regulator 
5ABTJ_RS118152478660..2479613 [-], 954446895327M15 family metallopeptidase 
6ABTJ_RS118202479621..2480223 [-], 603445968596hypothetical protein 
7ABTJ_RS118252480236..2481042 [-], 807446005770type IVB secretion system protein IcmH/DotU  TssL
8ABTJ_RS11830 (tssK)2481060..2482424 [-], 1365446393590type VI secretion system baseplate subunit TssK  TssK
9ABTJ_RS11835 (tssA)2482441..2483535 [-], 1095445942858type VI secretion system protein TssA  TssA
10ABTJ_RS11840 (tssH)2483559..2486240 [-], 2682487927950type VI secretion system ATPase TssH  TssH
11ABTJ_RS118452486460..2486723 [-], 264446090257PAAR domain-containing protein 
12ABTJ_RS118502486740..2487507 [-], 768446995154OmpA family protein 
13ABTJ_RS11855 (tagF)2487510..2488469 [-], 960446479387type VI secretion system-associated protein TagF 
14ABTJ_RS11860 (tssM)2488507..2492331 [-], 3825446479060type VI secretion system membrane subunit TssM  TssM
15ABTJ_RS118652492362..2493774 [-], 1413446514536hypothetical protein 
16ABTJ_RS11870 (tssG)2493771..2494769 [-], 999447113139type VI secretion system baseplate subunit TssG  TssG
17ABTJ_RS11875 (tssF)2494733..2496544 [-], 1812446490978type VI secretion system baseplate subunit TssF  TssF
18ABTJ_RS11880 (tssE)2496561..2497037 [-], 477446969775type VI secretion system baseplate subunit TssE  TssE
19ABTJ_RS118852497117..2497620 [-], 504446575849type VI secretion system tube protein Hcp  TssD
20ABTJ_RS11890 (tssC)2497670..2499151 [-], 1482446989267type VI secretion system contractile sheath large subunit  TssC
21ABTJ_RS11895 (tssB)2499144..2499647 [-], 504447041786type VI secretion system contractile sheath small subunit  TssB
22ABTJ_RS119002499664..2500356 [-], 693446792453hypothetical protein 
23ABTJ_RS119052501445..2501846 [+], 402445992937hypothetical protein 
24ABTJ_RS119102501942..2502886 [+], 945446464671ABC transporter permease 
25ABTJ_RS119152502886..2503767 [+], 882446922835ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU