I. Summary

SecReT6 ID	653
Strain	Escherichia coli Xuzhou21
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017906
Location	243533..288719
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	CDCO157_0209 (rnhA)	239085..239552 [-], 468	387880767	ribonuclease H
2	CDCO157_0210	239617..240348 [+], 732	387880768	DNA polymerase III subunit epsilon
3	CDCO157_0210A	240886..241686 [+], 801	387880769	putative aminopeptidase
4	CDCO157_0211	241871..242167 [-], 297	387880770	hypothetical protein
5	CDCO157_0212	242164..242613 [-], 450	387880771	hypothetical protein
6	CDCO157_0213	242616..243263 [-], 648	387880772	hypothetical protein
7	CDCO157_0214	243533..244012 [-], 480	387880773	Hcp-like protein	TssD
8	CDCO157_0215	243978..245387 [-], 1410	387880774	hypothetical protein	TssA
9	CDCO157_0216	245398..248505 [-], 3108	387880775	IcmF-like protein	TssM
10	CDCO157_0219	250385..251128 [-], 744	387880776	hypothetical protein
11	CDCO157_0220	251125..253896 [-], 2772	387880777	putative ATP-dependent Clp proteinase ATP-binding chain	TssH
12	CDCO157_0221	253905..254666 [-], 762	387880778	hypothetical protein	TssL
13	CDCO157_0222	254671..256002 [-], 1332	387880779	hypothetical protein	TssK
14	CDCO157_0223	256005..256529 [-], 525	387880780	lipoprotein	TssJ
15	CDCO157_0224	256526..257806 [-], 1281	387880781	hypothetical protein	Fha
16	CDCO157_0225	257831..258913 [-], 1083	387880782	hypothetical protein	TssG
17	CDCO157_0226	258877..260727 [-], 1851	387880783	hypothetical protein	TssF
18	CDCO157_0227	260731..261144 [-], 414	387880784	hypothetical protein	TssE
19	CDCO157_0228	261235..262626 [-], 1392	387880785	hypothetical protein	TssC
20	CDCO157_0229	262677..262901 [-], 225	387880786	hypothetical protein	TssC
21	CDCO157_0230	262936..263436 [-], 501	387880787	hypothetical protein	TssB
22	CDCO157_0231	264133..264651 [+], 519	387880788	hypothetical protein	TssD
23	CDCO157_0232	264684..264821 [+], 138	387880789	hypothetical protein
24	CDCO157_0233	264861..267002 [+], 2142	387880790	protein VgrG	TssI
25	CDCO157_0234	267078..271292 [+], 4215	387880791	RhsG core protein with extension	PAAR
26	CDCO157_0235	271295..271912 [+], 618	387880792	hypothetical protein
27	CDCO157_0236	271934..272116 [+], 183	387880793	hypothetical protein
28	CDCO157_0237	272260..272550 [+], 291	387880794	hypothetical protein
29	CDCO157_0238	272658..273794 [+], 1137	387880795	H repeat-containing protein
30	CDCO157_0239	273797..275557 [+], 1761	387880796	Rhs core protein
31	CDCO157_0240	275541..275711 [+], 171	387880797	hypothetical protein
32	CDCO157_0241	275759..276022 [+], 264	387880798	hypothetical protein
33	CDCO157_0242	276203..277375 [+], 1173	387880799	H repeat-containing protein
34	CDCO157_0243	277493..278263 [-], 771	387880800	hypothetical protein
35	CDCO157_0244	278417..278890 [+], 474	387880801	C-lysozyme inhibitor
36	CDCO157_0245 (fadE)	278933..281377 [-], 2445	387880802	acyl-CoA dehydrogenase
37	CDCO157_0246 (gmhA)	281617..282195 [+], 579	387880803	phosphoheptose isomerase
38	CDCO157_0247	282300..283067 [+], 768	387880804	putative amidotransferase
39	CDCO157_0248	283038..283778 [-], 741	387880805	hypothetical protein
40	CDCO157_0249	283934..284194 [-], 261	387880806	hypothetical protein
41	CDCO157_0250	284213..284473 [-], 261	387880807	protein DinJ
42	CDCO157_0251	284683..285432 [+], 750	387880808	putative lipoprotein
43	CDCO157_0252	285608..285904 [+], 297	387880809	hypothetical protein
44	CDCO157_0253	286250..287989 [-], 1740	387880810	FhiA protein
45	CDCO157_0254	287934..288719 [+], 786	387880811	hypothetical protein	TagL
46	CDCO157_0255	288790..289845 [+], 1056	387880812	DNA polymerase IV
47	CDCO157_0256	289897..290190 [+], 294	387880813	putative antitoxin of the YafO-YafN toxin-antitoxin system
48	CDCO157_0257	290193..290591 [+], 399	387880814	putative toxin YafO
49	CDCO157_0258	290601..291053 [+], 453	387880815	hypothetical protein
50	CDCO157_0259	291360..291626 [+], 267	387880816	hypothetical protein
51	CDCO157_0260 (prfH)	291595..292095 [+], 501	387880817	peptide chain release factor-like protein
52	CDCO157_0261	292152..293609 [-], 1458	387880818	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ABG57132

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	CDCO157_0231	264133..264651 [+], 519	387880788	hypothetical protein	ABG57132

Download FASTA format files

Proteins        Genes

N/A

N/A