SecReT6
I. Summary
SecReT6 ID656 insolico
StrainPseudomonas fluorescens A506
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017911
Location2621287..2638085
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011011111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PflA506_24022616796..2617854 [-], 1059387893588peptide ABC transporter, permease protein, YejB family 
2PflA506_24032617854..2619713 [-], 1860387893589peptide ABC transporter, periplasmic peptide-binding protein, YejA family 
3PflA506_2404 (ppiC_2)2619844..2620125 [-], 282387893590peptidyl-prolyl cis-trans isomerase C 
4PflA506_24052620234..2620728 [-], 495387893591hypothetical protein 
5PflA506_24062621287..2621802 [-], 516387893592type VI secretion system effector, Hcp family  TssD
6PflA506_2407 (tssA2)2622259..2623815 [+], 1557387893593type VI secretion protein TssA2  TssA
7PflA506_2408 (tssB2)2623840..2624337 [+], 498387893594type VI secretion protein TssB2  TssB
8PflA506_2409 (tssC2)2624365..2625843 [+], 1479387893595type VI secretion protein TssC2  TssC
9PflA506_2410 (tssE2)2625858..2626259 [+], 402387893596type VI secretion protein TssE2  TssE
10PflA506_2411 (tssF2)2626249..2628036 [+], 1788387893597type VI secretion protein TssF2  TssF
11PflA506_2412 (tssG2)2628000..2629007 [+], 1008387893598type VI secretion protein TssG2  TssG
12PflA506_24132629112..2630641 [+], 1530387893599sigma-54 dependent transcriptional regulator, Fis family  Sfa2
13PflA506_2414 (tagU)2630677..2630808 [+], 132387893600type VI secretion-associated lipoprotein TagU 
14PflA506_2415 (fha2)2630820..2632016 [+], 1197387893601type VI secretion protein Fha2  Fha
15PflA506_2416 (tssJ2)2632022..2632507 [+], 486387893602type VI secretion lipoprotein TssJ2  TssJ
16PflA506_2417 (tssK2)2632509..2633837 [+], 1329387893603type VI secretion protein TssK2  TssK
17PflA506_2418 (tssL2)2633843..2634703 [+], 861387893604type VI secretion protein TssL2  TssL
18PflA506_2419 (tssM2)2634720..2638085 [+], 3366387893605type VI secretion protein TssM2  TssM
19PflA506_2420 (stp1)2638082..2638813 [+], 732387893606serine/threonine phosphoprotein phosphatase Stp1  Stp1
20PflA506_2421 (stk1)2638810..2639652 [+], 843387893607serine/threonine protein kinase Stk1  Stk1
21PflA506_24222639661..2639990 [-], 330387893608hypothetical protein 
22PflA506_24232640002..2640280 [-], 279387893609hypothetical protein 
23PflA506_24242640602..2642671 [+], 2070387893610phosphotransferase system, EIIC domain/cyclic diguanylate phosphodiesterase (EAL) domain protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PflA506_24062621287..2621802 [-], 516387893592type VI secretion system effector, Hcp family PSPTO_5435

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU