 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PflA506_2402 | 2616796..2617854 [-], 1059 | 387893588 | peptide ABC transporter, permease protein, YejB family | |
2 | PflA506_2403 | 2617854..2619713 [-], 1860 | 387893589 | peptide ABC transporter, periplasmic peptide-binding protein, YejA family | |
3 | PflA506_2404 (ppiC_2) | 2619844..2620125 [-], 282 | 387893590 | peptidyl-prolyl cis-trans isomerase C | |
4 | PflA506_2405 | 2620234..2620728 [-], 495 | 387893591 | hypothetical protein | |
5 | PflA506_2406 | 2621287..2621802 [-], 516 | 387893592 | type VI secretion system effector, Hcp family | TssD |
6 | PflA506_2407 (tssA2) | 2622259..2623815 [+], 1557 | 387893593 | type VI secretion protein TssA2 | TssA |
7 | PflA506_2408 (tssB2) | 2623840..2624337 [+], 498 | 387893594 | type VI secretion protein TssB2 | TssB |
8 | PflA506_2409 (tssC2) | 2624365..2625843 [+], 1479 | 387893595 | type VI secretion protein TssC2 | TssC |
9 | PflA506_2410 (tssE2) | 2625858..2626259 [+], 402 | 387893596 | type VI secretion protein TssE2 | TssE |
10 | PflA506_2411 (tssF2) | 2626249..2628036 [+], 1788 | 387893597 | type VI secretion protein TssF2 | TssF |
11 | PflA506_2412 (tssG2) | 2628000..2629007 [+], 1008 | 387893598 | type VI secretion protein TssG2 | TssG |
12 | PflA506_2413 | 2629112..2630641 [+], 1530 | 387893599 | sigma-54 dependent transcriptional regulator, Fis family | Sfa2 |
13 | PflA506_2414 (tagU) | 2630677..2630808 [+], 132 | 387893600 | type VI secretion-associated lipoprotein TagU | |
14 | PflA506_2415 (fha2) | 2630820..2632016 [+], 1197 | 387893601 | type VI secretion protein Fha2 | Fha |
15 | PflA506_2416 (tssJ2) | 2632022..2632507 [+], 486 | 387893602 | type VI secretion lipoprotein TssJ2 | TssJ |
16 | PflA506_2417 (tssK2) | 2632509..2633837 [+], 1329 | 387893603 | type VI secretion protein TssK2 | TssK |
17 | PflA506_2418 (tssL2) | 2633843..2634703 [+], 861 | 387893604 | type VI secretion protein TssL2 | TssL |
18 | PflA506_2419 (tssM2) | 2634720..2638085 [+], 3366 | 387893605 | type VI secretion protein TssM2 | TssM |
19 | PflA506_2420 (stp1) | 2638082..2638813 [+], 732 | 387893606 | serine/threonine phosphoprotein phosphatase Stp1 | Stp1 |
20 | PflA506_2421 (stk1) | 2638810..2639652 [+], 843 | 387893607 | serine/threonine protein kinase Stk1 | Stk1 |
21 | PflA506_2422 | 2639661..2639990 [-], 330 | 387893608 | hypothetical protein | |
22 | PflA506_2423 | 2640002..2640280 [-], 279 | 387893609 | hypothetical protein | |
23 | PflA506_2424 | 2640602..2642671 [+], 2070 | 387893610 | phosphotransferase system, EIIC domain/cyclic diguanylate phosphodiesterase (EAL) domain protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein