I. Summary

SecReT6 ID	658
Strain	Burkholderia sp. KJ006
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_017920
Location	405723..436609
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	MYA_0377	400837..400977 [+], 141	387901137	hypothetical protein
2	MYA_0378	401005..401820 [-], 816	387901138	hypothetical protein
3	MYA_0379	401994..402110 [-], 117	387901139	hypothetical protein
4	MYA_0380	404067..404246 [+], 180	387901140	hypothetical protein
5	MYA_0381	404307..404435 [-], 129	387901141	hypothetical protein
6	MYA_0382	404608..405408 [-], 801	387901142	amino acid ABC transporter substrate-binding protein
7	MYA_0383	405723..408902 [+], 3180	387901143	VgrG protein	TssI
8	MYA_0384	408953..413515 [+], 4563	387901144	Rhs family protein
9	MYA_0385	414015..415295 [+], 1281	387901145	transposase
10	MYA_0386	415495..415812 [+], 318	387901146	hypothetical protein
11	MYA_0387	415905..416687 [-], 783	387901147	transmembrane protein	TssL
12	MYA_0388	416684..418030 [-], 1347	387901148	type VI secretion protein, VC_A0114 family	TssK
13	MYA_0389	418133..418744 [-], 612	387901149	type VI secretion lipoprotein/VasD	TssJ
14	MYA_0390	419155..419754 [+], 600	387901150	hypothetical protein
15	MYA_0391	419809..420324 [+], 516	387901151	type VI secretion protein	TssB
16	MYA_0392	420340..421830 [+], 1491	387901152	type VI secretion protein, EvpB/VC_A0108 family	TssC
17	MYA_0393	421937..422404 [+], 468	387901153	hypothetical protein	TssD
18	MYA_0394	422467..422952 [+], 486	387901154	type VI secretion system lysozyme-related protein	TssE
19	MYA_0395	423030..424865 [+], 1836	387901155	type VI secretion protein, VC_A0110 family	TssF
20	MYA_0396	424829..425929 [+], 1101	387901156	type VI secretion protein, VC_A0111 family	TssG
21	MYA_0397	425968..428640 [+], 2673	387901157	ClpB protein	TssH
22	MYA_0398	428680..429801 [+], 1122	387901158	type VI secretion-associated protein, ImpA family	TssA
23	MYA_0399	430001..430576 [-], 576	387901159	hypothetical protein
24	MYA_0400	430573..430701 [-], 129	387901160	hypothetical protein
25	MYA_0401	430718..431677 [-], 960	387901161	Outer membrane lipoprotein omp16	TagL
26	MYA_0402	431682..432671 [-], 990	387901162	hypothetical protein
27	MYA_0403	432668..436609 [-], 3942	387901163	transmembrane protein	TssM
28	MYA_0404	436911..437756 [-], 846	387901164	transmembrane protein
29	MYA_0405	437878..438846 [+], 969	387901165	Tail fiber protein
30	MYA_0406	439026..440054 [+], 1029	387901166	Mg2+ and Co2+ transporter

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

BCAL0343

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	MYA_0393	421937..422404 [+], 468	387901153	hypothetical protein	BCAL0343

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Proteins        Genes

N/A

N/A