I. Summary

SecReT6 ID	660
Strain	Burkholderia sp. KJ006
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_017921
Location	1951861..1970183
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	0	0	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	MYA_4711	1947637..1948410 [+], 774	387905457	ISPsy4, transposition helper protein
2	MYA_4713	1951861..1952511 [-], 651	387905458	type VI secretion lipoprotein/VasD	TssJ
3	MYA_4714	1952558..1953574 [-], 1017	387905459	type VI secretion protein ImpH/VasB	TssG
4	MYA_4715	1953637..1955451 [-], 1815	387905460	type VI secretion protein ImpG/VasA	TssF
5	MYA_4716	1955468..1958524 [-], 3057	387905461	hypothetical protein	TssM
6	MYA_4717	1958813..1958965 [+], 153	387905462	hypothetical protein
7	MYA_4718	1960314..1962290 [-], 1977	387905463	transmembrane protein
8	MYA_4719	1963582..1965897 [-], 2316	387905464	VgrG protein	TssI
9	MYA_4720	1965886..1966089 [+], 204	387905465	hypothetical protein
10	MYA_4721	1966355..1967677 [+], 1323	387905466	type VI secretion protein ImpC/EvpB	TssC
11	MYA_4722	1967674..1969080 [+], 1407	387905467	type VI secretion protein ImpJ/VasE	TssK
12	MYA_4723	1969254..1969739 [+], 486	387905468	hypothetical protein	TssL
13	MYA_4724	1969812..1970183 [+], 372	387905469	type VI secretion system lysozyme-related protein	TssE
14	MYA_4725	1970202..1970324 [-], 123	387905470	hypothetical protein
15	MYA_4726	1970421..1971608 [-], 1188	387905471	Outer membrane porin protein 32
16	MYA_4727	1972367..1973731 [-], 1365	387905472	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase
17	MYA_4728	1973776..1974543 [-], 768	387905473	Histidine ABC transporter, permease protein HisM

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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