SecReT6
I. Summary
SecReT6 ID661 insolico
StrainBurkholderia sp. KJ006
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_017922
Location770368..811934
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111112
ComponentTssGTssJTssKTssM
Number1211
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYA_5746766330..767379 [+], 1050387906479Membrane fusion component of tripartite multidrug resistance system 
2MYA_5747767376..768809 [+], 1434387906480Outer membrane component of tripartite multidrug resistance system 
3MYA_5748768849..770114 [-], 1266387906481Thioredoxin reductase 
4MYA_5749770368..770862 [-], 495387906482lipoprotein  TssJ
5MYA_5750770901..772721 [-], 1821387906483Type VI secretion protein, VC_A0110 family  TssF
6MYA_5752776360..777709 [-], 1350387906484hypothetical protein 
7MYA_5753777712..777894 [-], 183387906485PAAR repeat-containing protein  PAAR
8MYA_5754779222..781579 [-], 2358387906486hypothetical protein 
9MYA_5756784128..784478 [+], 351387906487hypothetical protein 
10MYA_5757784632..785162 [-], 531387906488Type VI secretion lipoprotein/VasD  TssJ
11MYA_5758785244..786341 [-], 1098387906489Type VI secretion protein, VC_A0111 family  TssG
12MYA_5759786338..788152 [-], 1815387906490Type VI secretion protein, VC_A0110 family  TssF
13MYA_5760788164..789744 [-], 1581387906491Type VI secretion-associated protein, VC_A0119 family  TssA
14MYA_5761789741..792617 [-], 2877387906492hypothetical protein  TssM
15MYA_5762792908..793039 [-], 132387906493hypothetical protein 
16MYA_5763796347..799103 [-], 2757387906494hypothetical protein 
17MYA_5764799113..801452 [-], 2340387906495VgrG protein  TssI
18MYA_5765801536..803068 [-], 1533387906496Type VI secretion protein, EvpB/VC_A0108 family  TssC
19MYA_5766803142..803654 [-], 513387906497Type VI secretion protein, VC_A0107 family  TssB
20MYA_5767804249..805601 [+], 1353387906498Type VI secretion protein, VC_A0114 family  TssK
21MYA_5768805598..806329 [+], 732387906499hypothetical protein  TssL
22MYA_5769806326..808047 [+], 1722387906500Flagellar motor rotation protein MotB  TagL
23MYA_5770808145..808630 [+], 486387906501Hemolysin-coregulated protein Hcp  TssD
24MYA_5771808770..811493 [+], 2724387906502Type VI secretion ATPase, ClpV1 family  TssH
25MYA_5772811509..811934 [+], 426387906503hypothetical protein  TssE
26MYA_5773812086..812559 [+], 474387906504dioxygenase 
27MYA_5774812561..813787 [+], 1227387906505Salicylate hydroxylase 
28MYA_5775813852..814211 [+], 360387906506hypothetical protein 
29MYA_5776814208..815881 [+], 1674387906507acetate permease ActP (cation/acetate symporter) 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1MYA_5770808145..808630 [+], 486387906501Hemolysin-coregulated protein Hcp EC042_4529

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU