I. Summary

SecReT6 ID	666
Strain	Advenella kashmirensis WT001
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017964
Location	4052652..4059906
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	0	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	0

6

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	TKWG_23520	4047989..4048777 [+], 789	389873860	hypothetical protein
2	TKWG_23525	4048936..4050177 [+], 1242	389873861	multidrug resistance protein
3	TKWG_23530	4050342..4051835 [+], 1494	389873862	drug efflux transporter
4	TKWG_23535	4051880..4052530 [-], 651	389873863	hypothetical protein
5	TKWG_23540	4052652..4054493 [-], 1842	389873864	hypothetical protein	TssF
6	TKWG_23545	4054493..4055047 [-], 555	389873865	hypothetical protein	TssE
7	TKWG_23550	4055111..4055932 [-], 822	389873866	hypothetical protein	TagJ
8	TKWG_23555	4056047..4056532 [-], 486	389873867	hypothetical protein	TssD
9	TKWG_23560	4056721..4058217 [-], 1497	389873868	hypothetical protein	TssC
10	TKWG_23565	4058231..4058785 [-], 555	389873869	hypothetical protein	TssB
11	TKWG_23570	4058857..4059906 [-], 1050	389873870	protein ImpA	TssA
12	TKWG_23575	4060278..4061576 [-], 1299	389873871	hypothetical protein
13	TKWG_23580	4061660..4062169 [-], 510	389873872	tripartite ATP-independent periplasmic transporter subunit DctQ family protein 5
14	TKWG_23585	4062166..4063140 [-], 975	389873873	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A