 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YSA_00285 | 145583..147349 [+], 1767 | 395443789 | iron-sulfur cluster-binding protein | |
2 | YSA_00286 | 147476..147868 [+], 393 | 395443790 | acetyltransferase | |
3 | YSA_00289 | 147915..148427 [-], 513 | 395443791 | AmiS/UreI transporter | |
4 | YSA_00291 | 148440..149024 [-], 585 | 395443792 | response regulator receiver/ANTAR domain-containing protein | |
5 | YSA_00292 | 149021..150181 [-], 1161 | 395443793 | branched-chain amino acid ABC transporter periplasmic component-like protein | |
6 | YSA_00294 | 150200..151321 [-], 1122 | 395443794 | ATPase | TssH |
7 | YSA_00295 | 151377..152420 [-], 1044 | 395443795 | acylamide amidohydrolase | |
8 | YSA_00296 | 152412..152546 [+], 135 | 395443796 | hypothetical protein | |
9 | YSA_00297 | 152606..153472 [-], 867 | 395443797 | dihydrodipicolinate synthase | |
10 | YSA_00298 | 153471..153599 [+], 129 | 395443798 | hypothetical protein | |
11 | YSA_00302 | 153810..157328 [-], 3519 | 395443799 | cellulose synthase subunit BcsC | |
12 | YSA_00304 | 157316..158434 [-], 1119 | 395443800 | endo-1,4-D-glucanase | |
13 | YSA_00305 | 158431..160719 [-], 2289 | 395443801 | Cyclic di-GMP-binding protein | |
14 | YSA_00308 | 160716..163253 [-], 2538 | 395443802 | cellulose synthase catalytic subunit | |
15 | YSA_00309 | 163336..164043 [-], 708 | 395443803 | cellulose synthase | |
16 | YSA_00312 | 164040..164258 [-], 219 | 395443804 | hypothetical protein | |
17 | YSA_00313 | 164255..165868 [-], 1614 | 395443805 | hypothetical protein | |
18 | YSA_00314 | 165861..166046 [-], 186 | 395443806 | hypothetical protein | |
19 | YSA_00316 | 166043..167419 [-], 1377 | 395443807 | hypothetical protein | |
20 | YSA_00315 | 167483..167611 [+], 129 | 395443808 | hypothetical protein | |
21 | YSA_00317 | 167593..167706 [+], 114 | 395443809 | hypothetical protein | |
22 | YSA_00320 | 167713..169689 [+], 1977 | 395443810 | ABC transporter ATP-binding protein | TagT |
23 | YSA_00322 | 169767..173387 [-], 3621 | 395443811 | ImcF domain-containing protein | TssM |
24 | YSA_00323 | 173384..174841 [-], 1458 | 395443812 | ImpA domain-containing protein | TssA |
25 | YSA_00324 | 174835..175392 [-], 558 | 395443813 | hypothetical protein | |
26 | YSA_00325 | 175513..175692 [+], 180 | 395443814 | hypothetical protein | |
27 | YSA_00327 | 175812..176315 [+], 504 | 395443815 | hypothetical protein | TssB |
28 | YSA_00331 | 176333..177823 [+], 1491 | 395443816 | hypothetical protein | TssC |
29 | YSA_00332 | 177820..178230 [+], 411 | 395443817 | GPW/gp25 family protein | TssE |
30 | YSA_00335 | 178234..180000 [+], 1767 | 395443818 | hypothetical protein | TssF |
31 | YSA_00336 | 180045..180980 [+], 936 | 395443819 | hypothetical protein | TssG |
32 | YSA_00338 | 180977..181546 [+], 570 | 395443820 | FHA domain-containing protein | Fha |
33 | YSA_00340 | 181543..182340 [+], 798 | 395443821 | hypothetical protein | TssJ |
34 | YSA_00341 | 182396..183733 [+], 1338 | 395443822 | hypothetical protein | TssK |
35 | YSA_00343 | 183735..184604 [+], 870 | 395443823 | hypothetical protein | TssL |
36 | YSA_00345 | 184631..184738 [-], 108 | 395443824 | hypothetical protein | |
37 | YSA_00347 | 184737..185252 [+], 516 | 395443825 | hypothetical protein | TssD |
38 | YSA_00348 | 185326..187494 [+], 2169 | 395443826 | Rhs element Vgr protein | TssI |
39 | YSA_00352 | 187491..188414 [+], 924 | 395443827 | hypothetical protein | |
40 | YSA_00353 | 188476..190542 [+], 2067 | 395443828 | hypothetical protein | |
41 | YSA_00356 | 190613..191395 [+], 783 | 395443829 | hypothetical protein | |
42 | YSA_00358 | 191398..192291 [+], 894 | 395443830 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein