I. Summary

SecReT6 ID	668
Strain	Pseudomonas putida ND6
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017986
Location	5580570..5605186
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YSA_10444	5576152..5577696 [-], 1545	395449294	major facilitator transporter
2	YSA_10445	5577886..5580402 [-], 2517	395449295	excinuclease ABC subunit A
3	YSA_10446	5580570..5581655 [-], 1086	395449296	ImpA domain-containing protein	TssA
4	YSA_10449	5581751..5582293 [-], 543	395449297	hypothetical protein	TssD
5	YSA_10450	5582413..5584908 [-], 2496	395449298	OmpA/MotB domain-containing protein	TssM
6	YSA_10452	5584905..5585813 [-], 909	395449299	hypothetical protein
7	YSA_10455	5585810..5589613 [-], 3804	395449300	ImcF domain-containing protein	TssM
8	YSA_10457	5589644..5590360 [-], 717	395449301	hypothetical protein	TssL
9	YSA_10459	5590357..5591700 [-], 1344	395449302	hypothetical protein	TssK
10	YSA_10461	5591697..5592419 [-], 723	395449303	hypothetical protein	TssJ
11	YSA_10463	5592444..5595041 [-], 2598	395449304	ATPase	TssH
12	YSA_10464	5595038..5596024 [-], 987	395449305	hypothetical protein	TssG
13	YSA_10466	5596072..5597892 [-], 1821	395449306	hypothetical protein	TssF
14	YSA_10467	5597892..5598374 [-], 483	395449307	hypothetical protein	TssE
15	YSA_10469	5598401..5599903 [-], 1503	395449308	hypothetical protein	TssC
16	YSA_10471	5599918..5600493 [-], 576	395449309	hypothetical protein	TssB
17	YSA_10474	5600522..5601286 [-], 765	395449310	hypothetical protein
18	YSA_10475	5601512..5601718 [+], 207	395449311	hypothetical protein
19	YSA_10479	5601865..5602416 [-], 552	395449312	hypothetical protein
20	YSA_10482	5602541..5602696 [+], 156	395449313	ADP-ribosyl- hydrolase
21	YSA_10485	5602742..5605186 [+], 2445	395449314	Rhs element Vgr protein	TssI
22	YSA_10487	5605197..5605781 [+], 585	395449315	hypothetical protein
23	YSA_10488	5605816..5606283 [+], 468	395449316	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

Psyr_4965

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YSA_10449	5581751..5582293 [-], 543	395449297	hypothetical protein	Psyr_4965

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Proteins        Genes

N/A

N/A