 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | USDA257_c28420 | 2978615..2979133 [-], 519 | 398352706 | hypothetical protein | |
2 | USDA257_c28430 | 2979167..2981308 [-], 2142 | 398352707 | hypothetical protein | |
3 | USDA257_c28440 | 2981696..2984002 [+], 2307 | 398352708 | hypothetical protein | TssI |
4 | USDA257_c28450 | 2984015..2984440 [+], 426 | 398352709 | hypothetical protein | TssI |
5 | USDA257_c28460 | 2984440..2984787 [+], 348 | 398352710 | hypothetical protein | |
6 | USDA257_c28470 | 2984796..2985851 [-], 1056 | 398352711 | hypothetical protein | |
7 | USDA257_c28480 | 2985867..2986841 [-], 975 | 398352712 | hypothetical protein | |
8 | USDA257_c28490 | 2986838..2987875 [-], 1038 | 398352713 | hypothetical protein | |
9 | USDA257_c28500 | 2987872..2988972 [-], 1101 | 398352714 | hypothetical protein | |
10 | USDA257_c28510 | 2988972..2989517 [-], 546 | 398352715 | hypothetical protein | |
11 | USDA257_c28520 | 2989499..2993029 [-], 3531 | 398352716 | hypothetical protein | TssM |
12 | USDA257_c28530 | 2993031..2994350 [-], 1320 | 398352717 | hypothetical protein | TssL |
13 | USDA257_c28540 | 2994355..2995689 [-], 1335 | 398352718 | hypothetical protein | TssK |
14 | USDA257_c28550 | 2995706..2996164 [-], 459 | 398352719 | hypothetical protein | TssJ |
15 | USDA257_c28560 | 2996164..2997411 [-], 1248 | 398352720 | hypothetical protein | Fha |
16 | USDA257_c28570 | 2997405..2998472 [-], 1068 | 398352721 | hypothetical protein | TssG |
17 | USDA257_c28580 | 2998436..3000310 [-], 1875 | 398352722 | hypothetical protein | TssF |
18 | USDA257_c28590 | 3000312..3001079 [-], 768 | 398352723 | hypothetical protein | TssE |
19 | USDA257_c28600 | 3001060..3001509 [-], 450 | 398352724 | hypothetical protein | TssD |
20 | USDA257_c28610 | 3001539..3003047 [-], 1509 | 398352725 | hypothetical protein | TssC |
21 | USDA257_c28620 | 3003051..3003587 [-], 537 | 398352726 | hypothetical protein | TssB |
22 | USDA257_c28630 | 3003591..3004739 [-], 1149 | 398352727 | hypothetical protein | TssA |
23 | USDA257_c28640 (sps) | 3004819..3006936 [-], 2118 | 398352728 | serine/threonine-protein kinase Sps | |
24 | USDA257_c28650 (clpV) | 3007099..3009831 [+], 2733 | 398352729 | protein ClpV | TssH |
25 | USDA257_c28660 | 3009864..3010610 [-], 747 | 398352730 | hypothetical protein | TagL |
26 | USDA257_c28670 (prpC) | 3010729..3011499 [+], 771 | 398352731 | protein phosphatase PrpC | |
27 | USDA257_c28680 | 3011496..3012380 [+], 885 | 398352732 | hypothetical protein | |
28 | USDA257_c28690 | 3012413..3014878 [+], 2466 | 398352733 | hypothetical protein | TssM |
29 | USDA257_c28700 | 3014980..3015456 [-], 477 | 398352734 | mucR family transcriptional regulatory protein y4pD | |
30 | USDA257_c28710 (kpsM1) | 3015996..3016772 [+], 777 | 398352735 | polysialic acid transport protein KpsM | |
31 | USDA257_c28720 (lpsZ1) | 3016776..3017864 [-], 1089 | 398352736 | lipopolysaccharide-processing protein LpsZ | |
32 | USDA257_c28730 | 3018111..3019877 [+], 1767 | 398352737 | cps10D: Cps10D | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein