SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	669
Strain	Sinorhizobium fredii USDA 257
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018000
Location	2981696..3014878
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	USDA257_c28420	2978615..2979133 [-], 519	398352706	hypothetical protein
2	USDA257_c28430	2979167..2981308 [-], 2142	398352707	hypothetical protein
3	USDA257_c28440	2981696..2984002 [+], 2307	398352708	hypothetical protein	TssI
4	USDA257_c28450	2984015..2984440 [+], 426	398352709	hypothetical protein	TssI
5	USDA257_c28460	2984440..2984787 [+], 348	398352710	hypothetical protein
6	USDA257_c28470	2984796..2985851 [-], 1056	398352711	hypothetical protein
7	USDA257_c28480	2985867..2986841 [-], 975	398352712	hypothetical protein
8	USDA257_c28490	2986838..2987875 [-], 1038	398352713	hypothetical protein
9	USDA257_c28500	2987872..2988972 [-], 1101	398352714	hypothetical protein
10	USDA257_c28510	2988972..2989517 [-], 546	398352715	hypothetical protein
11	USDA257_c28520	2989499..2993029 [-], 3531	398352716	hypothetical protein	TssM
12	USDA257_c28530	2993031..2994350 [-], 1320	398352717	hypothetical protein	TssL
13	USDA257_c28540	2994355..2995689 [-], 1335	398352718	hypothetical protein	TssK
14	USDA257_c28550	2995706..2996164 [-], 459	398352719	hypothetical protein	TssJ
15	USDA257_c28560	2996164..2997411 [-], 1248	398352720	hypothetical protein	Fha
16	USDA257_c28570	2997405..2998472 [-], 1068	398352721	hypothetical protein	TssG
17	USDA257_c28580	2998436..3000310 [-], 1875	398352722	hypothetical protein	TssF
18	USDA257_c28590	3000312..3001079 [-], 768	398352723	hypothetical protein	TssE
19	USDA257_c28600	3001060..3001509 [-], 450	398352724	hypothetical protein	TssD
20	USDA257_c28610	3001539..3003047 [-], 1509	398352725	hypothetical protein	TssC
21	USDA257_c28620	3003051..3003587 [-], 537	398352726	hypothetical protein	TssB
22	USDA257_c28630	3003591..3004739 [-], 1149	398352727	hypothetical protein	TssA
23	USDA257_c28640 (sps)	3004819..3006936 [-], 2118	398352728	serine/threonine-protein kinase Sps
24	USDA257_c28650 (clpV)	3007099..3009831 [+], 2733	398352729	protein ClpV	TssH
25	USDA257_c28660	3009864..3010610 [-], 747	398352730	hypothetical protein	TagL
26	USDA257_c28670 (prpC)	3010729..3011499 [+], 771	398352731	protein phosphatase PrpC
27	USDA257_c28680	3011496..3012380 [+], 885	398352732	hypothetical protein
28	USDA257_c28690	3012413..3014878 [+], 2466	398352733	hypothetical protein	TssM
29	USDA257_c28700	3014980..3015456 [-], 477	398352734	mucR family transcriptional regulatory protein y4pD
30	USDA257_c28710 (kpsM1)	3015996..3016772 [+], 777	398352735	polysialic acid transport protein KpsM
31	USDA257_c28720 (lpsZ1)	3016776..3017864 [-], 1089	398352736	lipopolysaccharide-processing protein LpsZ
32	USDA257_c28730	3018111..3019877 [+], 1767	398352737	cps10D: Cps10D

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A