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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PADK2_13380 | 2881639..2882844 [-], 1206 | 392984072 | hypothetical protein | |
2 | PADK2_13385 | 2883045..2883686 [-], 642 | 392984073 | transcriptional regulator | |
3 | PADK2_13390 | 2883963..2884358 [+], 396 | 392984074 | hypothetical protein | |
4 | PADK2_13395 | 2884381..2884917 [-], 537 | 392984075 | hypothetical protein | |
5 | PADK2_13400 | 2884928..2886832 [-], 1905 | 392984076 | hypothetical protein | TssI |
6 | PADK2_13405 | 2886938..2887723 [-], 786 | 392984077 | hypothetical protein | |
7 | PADK2_13410 | 2887793..2888668 [-], 876 | 392984078 | hypothetical protein | |
8 | PADK2_13415 | 2888759..2891308 [-], 2550 | 392984079 | ClpA/B-type protease | TssH |
9 | PADK2_13420 | 2891310..2892326 [-], 1017 | 392984080 | hypothetical protein | TssG |
10 | PADK2_13425 | 2892290..2894083 [-], 1794 | 392984081 | type VI secretion system protein ImpG | TssF |
11 | PADK2_13430 | 2894067..2894492 [-], 426 | 392984082 | hypothetical protein | TssE |
12 | PADK2_13435 | 2894505..2895002 [-], 498 | 392984083 | hypothetical protein | TssD |
13 | PADK2_13440 | 2895076..2896560 [-], 1485 | 392984084 | hypothetical protein | TssC |
14 | PADK2_13445 | 2896583..2897128 [-], 546 | 392984085 | hypothetical protein | TssB |
15 | PADK2_13450 | 2897337..2897813 [+], 477 | 392984086 | hypothetical protein | |
16 | PADK2_13455 | 2897912..2899204 [+], 1293 | 392984087 | hypothetical protein | TssK |
17 | PADK2_13460 | 2899222..2899980 [+], 759 | 392984088 | type VI secretion system protein ImpK | TssL |
18 | PADK2_13465 | 2900192..2903800 [+], 3609 | 392984089 | type VI secretion system protein ImpL | TssM |
19 | PADK2_13470 | 2903797..2904897 [+], 1101 | 392984090 | hypothetical protein | TssA |
20 | PADK2_13475 | 2905007..2906092 [+], 1086 | 392984091 | transcriptional regulator | Sfa3 |
21 | PADK2_13480 | 2906328..2906594 [+], 267 | 392984092 | hypothetical protein | |
22 | PADK2_13485 | 2906754..2907314 [+], 561 | 392984093 | NADH-dependent FMN reductase MsuE | |
23 | PADK2_13490 | 2907324..2908469 [+], 1146 | 392984094 | methanesulfonate sulfonatase MsuD | |
24 | PADK2_13495 | 2908499..2909683 [+], 1185 | 392984095 | FMNH2-dependent monooxygenase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein