I. Summary

SecReT6 ID	678
Strain	Klebsiella oxytoca E718
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018106
Location	3529603..3563336
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	0	1	1	0	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	A225_3355	3525111..3526181 [-], 1071	397658357	ABC transporter
2	A225_3356	3526174..3527943 [-], 1770	397658358	Ferric iron ABC transporter
3	A225_3357	3528015..3529103 [-], 1089	397658359	ABC transporter
4	A225_3358	3529603..3530148 [-], 546	397658360	hypothetical protein	TssJ
5	A225_3359	3530126..3531211 [-], 1086	397658361	hypothetical protein	TssG
6	A225_3360	3531175..3532929 [-], 1755	397658362	protein ImpG/VasA	TssF
7	A225_3361	3533283..3533486 [-], 204	397658363	hypothetical protein
8	A225_3362	3533797..3537267 [-], 3471	397658364	hypothetical protein	TssM
9	A225_3363	3537264..3538538 [-], 1275	397658365	hypothetical protein
10	A225_3364	3541576..3541893 [-], 318	397658366	hypothetical protein
11	A225_3365	3542744..3545881 [-], 3138	397658367	hypothetical protein
12	A225_3366	3545929..3546213 [-], 285	397658368	hypothetical protein
13	A225_3367	3546717..3547040 [-], 324	397658369	hypothetical protein
14	A225_3369	3548430..3549155 [-], 726	397658370	hypothetical protein
15	A225_3370	3549260..3549889 [-], 630	397658371	hypothetical protein
16	A225_3371	3550101..3552986 [-], 2886	397658372	hypothetical protein
17	A225_3372	3553245..3554117 [-], 873	397658373	hypothetical protein
18	A225_3373	3554117..3556459 [-], 2343	397658374	VgrG protein	TssI
19	A225_3374	3556456..3556767 [-], 312	397658375	clpB protein
20	A225_3375	3557108..3557599 [-], 492	397658376	hypothetical protein	TssD
21	A225_3376	3557604..3559094 [-], 1491	397658377	outer membrane protein	TagL
22	A225_3377	3559225..3559914 [-], 690	397658378	hypothetical protein	TssL
23	A225_3378	3559911..3561251 [-], 1341	397658379	hypothetical protein	TssK
24	A225_3379	3561272..3562810 [-], 1539	397658380	hypothetical protein	TssC
25	A225_3380	3562845..3563336 [-], 492	397658381	hypothetical protein	TssB
26	A225_3381	3563748..3563864 [-], 117	397658382	hypothetical protein
27	A225_3382	3564197..3565279 [+], 1083	397658383	malate dehydrogenase
28	A225_3383	3565517..3567667 [+], 2151	397658384	formate dehydrogenase H

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	A225_3375	3557108..3557599 [-], 492	397658376	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A