I. Summary

SecReT6 ID	679
Strain	Klebsiella oxytoca E718
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018106
Location	4309060..4334292
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	A225_4085	4304166..4304924 [+], 759	397659076	transcriptional regulator
2	A225_4086	4304974..4305981 [-], 1008	397659077	Nucleoid-associated protein NdpA
3	A225_4087	4306094..4306387 [+], 294	397659078	hypothetical protein
4	A225_4088	4306449..4308167 [+], 1719	397659079	hydrolase of alkaline phosphatase superfamily
5	A225_4090	4308440..4308592 [-], 153	397659080	hypothetical protein
6	A225_4091	4308615..4309067 [-], 453	397659081	hypothetical protein	TssE
7	A225_4092	4309060..4309596 [-], 537	397659082	hypothetical protein	TssJ
8	A225_4093	4309577..4310671 [-], 1095	397659083	hypothetical protein	TssG
9	A225_4094	4310635..4312398 [-], 1764	397659084	protein ImpG/VasA	TssF
10	A225_4095	4313128..4313265 [+], 138	397659085	hypothetical protein
11	A225_4096	4313221..4313415 [-], 195	397659086	hypothetical protein
12	A225_4097	4313405..4313767 [-], 363	397659087	hypothetical protein	TssA
13	A225_4098	4313767..4317168 [-], 3402	397659088	hypothetical protein	TssM
14	A225_4099	4317173..4318333 [-], 1161	397659089	hypothetical protein
15	A225_4100	4319310..4321214 [-], 1905	397659090	hypothetical protein
16	A225_4101	4321755..4324370 [-], 2616	397659091	VgrG protein	TssI
17	A225_4102	4324957..4325880 [+], 924	397659092	transposase
18	A225_4103	4325925..4326368 [-], 444	397659093	hypothetical protein
19	A225_4104	4326534..4327637 [-], 1104	397659094	clpB protein	TssH
20	A225_4105	4327978..4328469 [-], 492	397659095	hypothetical protein	TssD
21	A225_4106	4328474..4330102 [-], 1629	397659096	outer membrane protein	TagL
22	A225_4107	4330202..4330855 [-], 654	397659097	transmembrane protein	TssL
23	A225_4108	4330852..4332189 [-], 1338	397659098	hypothetical protein	TssK
24	A225_4109	4332208..4333758 [-], 1551	397659099	hypothetical protein	TssC
25	A225_4110	4333795..4334292 [-], 498	397659100	hypothetical protein	TssB
26	A225_4111	4335274..4336380 [+], 1107	397659101	hypothetical protein
27	A225_4112	4336583..4337074 [+], 492	397659102	proteinase inhibitor I11
28	A225_4114	4337119..4338753 [-], 1635	397659103	malate:quinone oxidoreductase
29	A225_4113	4338723..4338854 [+], 132	397659104	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	A225_4105	4327978..4328469 [-], 492	397659095	hypothetical protein	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

N/A