 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BMA_RS17920 | 371884..372825 [-], 942 | 490295498 | LysR family transcriptional regulator | |
2 | BMA_RS17925 | 372922..374237 [+], 1316 | pseudogene | D-serine ammonia-lyase | |
3 | BMA_RS17930 | 374408..375322 [-], 915 | 490294974 | LysR family transcriptional regulator | |
4 | BMA_RS17935 | 375504..376208 [+], 705 | 490295326 | SDR family oxidoreductase | |
5 | BMA_RS26115 | 376770..376946 [-], 177 | 490295390 | hypothetical protein | |
6 | BMA_RS17940 | 376995..377312 [-], 318 | 490310751 | chorismate lyase | |
7 | BMA_RS17945 | 377249..377494 [-], 246 | 1121458858 | chorismate lyase | |
8 | BMA_RS17950 | 377622..378857 [-], 1236 | 741014115 | flavin-dependent oxidoreductase | |
9 | BMA_RS17955 | 379131..379316 [-], 186 | 490295378 | hypothetical protein | |
10 | BMA_RS17960 | 379335..381233 [+], 1899 | 490308269 | DUF3857 and transglutaminase domain-containing protein | |
11 | BMA_RS17965 (tagH) | 381276..382712 [-], 1437 | 490294955 | type VI secretion system-associated FHA domain protein TagH | |
12 | BMA_RS17970 | 382767..383168 [-], 402 | 490294824 | TssQ family T6SS-associated lipoprotein | |
13 | BMA_RS17975 (tssJ) | 383808..384326 [+], 519 | 490295246 | type VI secretion system lipoprotein TssJ | |
14 | BMA_RS17980 (tssK) | 384323..385726 [+], 1404 | 490295036 | type VI secretion system baseplate subunit TssK | |
15 | BMA_RS17985 | 385742..387058 [+], 1317 | 490295223 | DotU family type VI secretion system protein | |
16 | BMA_RS17990 (tssM) | 387061..390690 [+], 3630 | 490295215 | type VI secretion system membrane subunit TssM | |
17 | BMA_RS17995 (tagF) | 390687..391602 [+], 916 | pseudogene | type VI secretion system-associated protein TagF | |
18 | BMA_RS18000 | 391587..391814 [-], 228 | 490294720 | hypothetical protein | |
19 | BMA_RS18005 | 391813..394410 [+], 2598 | 490295332 | protein kinase | |
20 | BMA_RS18010 (tssA) | 394463..395542 [+], 1080 | 490295524 | type VI secretion system protein TssA | |
21 | BMA_RS18015 (tssB) | 395605..396183 [+], 579 | 490295193 | type VI secretion system contractile sheath small subunit | |
22 | BMA_RS18020 (tssC) | 396176..397684 [+], 1509 | 490295385 | type VI secretion system contractile sheath large subunit | |
23 | BMA_RS18025 | 397744..398235 [+], 492 | 490295232 | type VI secretion system tube protein Hcp | |
24 | BMA_RS18030 (tssE) | 398254..398814 [+], 561 | 490300750 | type VI secretion system baseplate subunit TssE | |
25 | BMA_RS18035 (tssF) | 398819..400690 [+], 1872 | 490294960 | type VI secretion system baseplate subunit TssF | |
26 | BMA_RS18040 (tssG) | 400687..402177 [+], 1491 | 490300751 | type VI secretion system baseplate subunit TssG | |
27 | BMA_RS18045 (tssH) | 402156..404810 [+], 2655 | 490295248 | type VI secretion system ATPase TssH | |
28 | BMA_RS18050 (tssI) | 404807..407011 [+], 2205 | 490308264 | type VI secretion system tip protein VgrG | |
29 | BMA_RS18055 | 407086..407739 [+], 654 | 490300753 | hypothetical protein | |
30 | BMA_RS18060 | 407669..408727 [+], 1059 | 490300756 | RHS repeat protein | |
31 | BMA_RS18065 | 408755..409875 [-], 1121 | 741020948 | IS3 family transposase | |
32 | BMA_RS18070 | 409943..410536 [-], 594 | pseudogene | acyltransferase family protein | |
33 | BMA_RS18075 | 410549..411529 [-], 981 | 499517700 | methyltransferase domain-containing protein | |
34 | BMA_RS18080 | 412046..413470 [+], 1425 | 490295311 | cytosine permease | |
35 | BMA_RS18085 | 413467..414405 [+], 939 | 490294691 | NAD-dependent protein deacetylase | |
36 | BMA_RS18090 | 414368..415045 [+], 678 | 490294911 | DUF938 domain-containing protein | |
37 | BMA_RS18095 | 415369..415512 [-], 144 | 490295039 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein