I. Summary

SecReT6 ID	684
Strain	Pseudomonas putida DOT-T1E
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018220
Location	462045..476972
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	T1E_0403	457127..458146 [-], 1020	397693173	hypothetical protein
2	T1E_0404	458139..458324 [-], 186	397693174	hypothetical protein
3	T1E_0405	458321..459811 [-], 1491	397693175	hypothetical protein
4	T1E_0406	459960..460091 [-], 132	397693176	hypothetical protein
5	T1E_0407	460114..461967 [+], 1854	397693177	ABC transporter ATP-binding protein	TagT
6	T1E_0408	462045..465665 [-], 3621	397693178	ImcF domain-containing protein	TssM
7	T1E_0409	465662..467125 [-], 1464	397693179	ImpA domain-containing protein	TssA
8	T1E_0410	467113..467670 [-], 558	397693180	hypothetical protein
9	T1E_0411	468090..468593 [+], 504	397693181	hypothetical protein	TssB
10	T1E_0412	468611..470101 [+], 1491	397693182	hypothetical protein	TssC
11	T1E_0413	470098..470508 [+], 411	397693183	GPW/gp25 family protein	TssE
12	T1E_0414	470512..472278 [+], 1767	397693184	hypothetical protein	TssF
13	T1E_0415	472335..473258 [+], 924	397693185	hypothetical protein	TssG
14	T1E_0416	473255..473824 [+], 570	397693186	FHA domain-containing protein	Fha
15	T1E_0417	473821..474618 [+], 798	397693187	hypothetical protein	TssJ
16	T1E_0418	474674..476011 [+], 1338	397693188	hypothetical protein	TssK
17	T1E_0419	476013..476972 [+], 960	397693189	hypothetical protein	TssL
18	T1E_0420 (lgrC)	476686..479157 [-], 2472	397693190	amino acid adenylation domain-containing protein
19	T1E_0421	479406..480602 [+], 1197	397693191	peptidase
20	T1E_0422	480599..481141 [+], 543	397693192	hypothetical protein
21	T1E_0423	481169..481918 [-], 750	397693193	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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