I. Summary

SecReT6 ID	689
Strain	Burkholderia cepacia GG4
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_018514
Location	1123167..1145345
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	GEM_4202	1121886..1123151 [-], 1266	402568942	hypothetical protein
2	GEM_4203	1123167..1125371 [-], 2205	402568943	Rhs element Vgr protein	TssI
3	GEM_4204	1125368..1128034 [-], 2667	402568944	ATP-dependent Clp protease, ATP-binding subunit ClpB	TssH
4	GEM_4205	1128047..1129156 [-], 1110	402568945	hypothetical protein	TssG
5	GEM_4206	1129153..1131024 [-], 1872	402568946	hypothetical protein	TssF
6	GEM_4207	1131029..1131577 [-], 549	402568947	hypothetical protein	TssE
7	GEM_4208	1131594..1132085 [-], 492	402568948	hypothetical protein	TssD
8	GEM_4209	1132157..1133665 [-], 1509	402568949	hypothetical protein	TssC
9	GEM_4210	1133658..1134197 [-], 540	402568950	hypothetical protein	TssB
10	GEM_4211	1134258..1135388 [-], 1131	402568951	ImpA-like protein	TssA
11	GEM_4212	1135375..1137735 [-], 2361	402568952	serine/threonine protein kinase
12	GEM_4213	1137802..1138497 [-], 696	402568953	hypothetical protein
13	GEM_4214	1138479..1142108 [-], 3630	402568954	hypothetical protein	TssM
14	GEM_4215	1142110..1143429 [-], 1320	402568955	hypothetical protein	TssL
15	GEM_4216	1143445..1144833 [-], 1389	402568956	hypothetical protein	TssK
16	GEM_4217	1144830..1145345 [-], 516	402568957	hypothetical protein	TssJ
17	GEM_4218	1145977..1146363 [+], 387	402568958	hypothetical protein
18	GEM_4219	1146412..1147839 [+], 1428	402568959	FHA domain-containing protein	Fha
19	GEM_4220	1148139..1149719 [-], 1581	402568960	aldehyde dehydrogenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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