 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BMA_RS18145 | 425119..426153 [+], 1035 | 490294883 | lipase secretion chaperone | |
2 | BMA_RS18150 | 426255..427784 [-], 1530 | 490305476 | PLP-dependent aminotransferase family protein | |
3 | BMA_RS18155 | 427893..428993 [+], 1101 | 490295292 | ABC transporter ATP-binding protein | |
4 | BMA_RS18160 | 429068..430114 [+], 1047 | 490295316 | ABC transporter substrate-binding protein | |
5 | BMA_RS18165 | 430215..431474 [+], 1260 | 490300774 | ABC transporter permease | |
6 | BMA_RS18170 | 431505..432331 [+], 827 | pseudogene | ABC transporter permease | |
7 | BMA_RS18175 | 432426..432857 [-], 432 | pseudogene | peptidase S53 | |
8 | BMA_RS18180 | 432906..434026 [-], 1121 | 741020948 | IS3 family transposase | |
9 | BMA_RS18185 (tssB) | 434096..434563 [+], 468 | pseudogene | type VI secretion system contractile sheath small subunit | |
10 | BMA_RS18190 (tssC) | 434566..436071 [+], 1506 | 490295382 | type VI secretion system contractile sheath large subunit | |
11 | BMA_RS18195 | 436215..436742 [+], 528 | 490300780 | type VI secretion system tube protein Hcp | |
12 | BMA_RS18200 | 436822..437253 [+], 432 | 490295415 | GPW/gp25 family protein | |
13 | BMA_RS18205 (tssF) | 437267..439129 [+], 1863 | 490300782 | type VI secretion system baseplate subunit TssF | |
14 | BMA_RS18210 (tssG) | 439126..440115 [+], 990 | 490295387 | type VI secretion system baseplate subunit TssG | |
15 | BMA_RS18215 (tssH) | 440118..442988 [+], 2871 | pseudogene | type VI secretion system ATPase TssH | |
16 | BMA_RS18220 (vgrG) | 442979..445225 [+], 2247 | 490300787 | type VI secretion system tip protein VgrG | |
17 | BMA_RS18225 (vgrG) | 445391..447679 [+], 2289 | 490295014 | type VI secretion system tip protein VgrG | |
18 | BMA_RS18230 | 447683..449899 [+], 2217 | 490305479 | pentapeptide repeat-containing protein | |
19 | BMA_RS18235 | 449899..450969 [+], 1071 | 490307160 | pentapeptide repeat-containing protein | |
20 | BMA_RS18240 | 450972..451688 [+], 717 | 490387208 | DUF3540 domain-containing protein | |
21 | BMA_RS18245 | 451731..452120 [+], 390 | 490295064 | DUF4150 domain-containing protein | |
22 | BMA_RS18250 (tssK) | 452305..453450 [+], 1146 | 490300801 | type VI secretion system baseplate subunit TssK | |
23 | BMA_RS18255 | 453469..454077 [+], 609 | 490311553 | type VI secretion system baseplate subunit TssK | |
24 | BMA_RS18260 | 454160..455818 [+], 1659 | 490294913 | type IVB secretion system protein IcmH/DotU | |
25 | BMA_RS18265 (tssM) | 455815..459318 [+], 3504 | 490294712 | type VI secretion system membrane subunit TssM | |
26 | BMA_RS18270 | 459377..459736 [+], 360 | 490295399 | hypothetical protein | |
27 | BMA_RS18275 | 459759..460184 [+], 426 | 490294922 | hypothetical protein | |
28 | BMA_RS18280 | 460505..460780 [+], 276 | 490295280 | hypothetical protein | |
29 | BMA_RS18285 | 461331..462230 [+], 900 | 490291378 | alpha/beta hydrolase | |
30 | BMA_RS18290 | 462272..462562 [-], 291 | 490305952 | hypothetical protein | |
31 | BMA_RS18295 | 462452..463771 [+], 1320 | 490291357 | glycosyltransferase | |
32 | BMA_RS18300 | 463768..465354 [+], 1587 | 490288762 | DHA2 family efflux MFS transporter permease subunit | |
33 | BMA_RS18305 | 465619..466614 [+], 996 | 490291223 | glycosyltransferase family 2 protein | |
34 | BMA_RS18315 | 466919..468514 [+], 1596 | 490300954 | efflux transporter outer membrane subunit | |
35 | BMA_RS18320 | 468995..470248 [+], 1254 | 490291248 | efflux RND transporter periplasmic adaptor subunit | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein