SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	694
Strain	Burkholderia pseudomallei BPC006
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_018529
Location	88359..145811
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	2	2	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BPC006_II0096	83687..83821 [+], 135	403521390	hypothetical protein
2	BPC006_II0097	84084..84179 [+], 96	403521391	hypothetical protein
3	BPC006_II0098	84850..85221 [+], 372	403521392	putrescine transport system permease PotH
4	BPC006_II0099	85481..85630 [-], 150	403521393	hypothetical protein
5	BPC006_II0100	85834..85938 [-], 105	403521394	hypothetical protein
6	BPC006_II0101	86080..87090 [+], 1011	403521395	ABC transport system, exported substrate-binding protein
7	BPC006_II0102	88359..91139 [+], 2781	403521396	Rhs element Vgr protein	TssI
8	BPC006_II0103	91153..93393 [+], 2241	403521397	Type V secretory pathway, adhesin AidA	BTH_II0090 (e)
9	BPC006_II0104	93412..95070 [+], 1659	403521398	hypothetical protein
10	BPC006_II0105	95080..95343 [+], 264	403521399	PAAR motif-containing protein	PAAR
11	BPC006_II0106	95494..95778 [+], 285	403521400	hypothetical protein
12	BPC006_II0107	95758..96177 [-], 420	403521401	hypothetical protein
13	BPC006_II0108	96197..96523 [-], 327	403521402	thioredoxin
14	BPC006_II0109	96699..96983 [+], 285	403521403	hypothetical protein
15	BPC006_II0110	96995..97687 [+], 693	403521404	lipoprotein
16	BPC006_II0111	98080..98268 [-], 189	403521405	hypothetical protein
17	BPC006_II0112	98273..99016 [-], 744	403521406	hypothetical protein
18	BPC006_II0113	99013..100608 [-], 1596	403521407	cytochrome c oxidase subunit I
19	BPC006_II0114	100738..100845 [+], 108	403521408	hypothetical protein
20	BPC006_II0115	101130..101264 [-], 135	403521409	hypothetical protein
21	BPC006_II0116	101758..103338 [-], 1581	403521410	hypothetical protein
22	BPC006_II0117	103888..103980 [+], 93	403521411	hypothetical protein
23	BPC006_II0118	104503..104628 [+], 126	403521412	hypothetical protein
24	BPC006_II0119	105624..106031 [+], 408	403521413	hemagluttinin family protein
25	BPC006_II0120	106098..107549 [-], 1452	403521414	PqaA protein
26	BPC006_II0121	107621..107836 [+], 216	403521415	hypothetical protein
27	BPC006_II0122	107847..108401 [-], 555	403521416	outer membrane protein
28	BPC006_II0123	109049..109531 [+], 483	403521417	fimbrial protein
29	BPC006_II0124	109653..110333 [+], 681	403521418	fimbrial assembly chaperone protein
30	BPC006_II0125	110431..113190 [+], 2760	403521419	fimbrial usher protein
31	BPC006_II0126	113168..113755 [+], 588	403521420	major fimbrial subunit protein
32	BPC006_II0127	113787..114476 [+], 690	403521421	hypothetical protein	TssL
33	BPC006_II0128	114527..116155 [+], 1629	403521422	OmpA family protein	TagL
34	BPC006_II0129	116295..116387 [+], 93	403521423	hypothetical protein
35	BPC006_II0130	116545..117084 [+], 540	403521424	hypothetical protein	TssB
36	BPC006_II0131	117118..118617 [+], 1500	403521425	hypothetical protein	TssC
37	BPC006_II0132	118817..119299 [+], 483	403521426	SciM protein	TssD
38	BPC006_II0133	119337..119969 [+], 633	403521427	SciN protein	TssJ
39	BPC006_II0134	119966..121324 [+], 1359	403521428	hypothetical protein	TssK
40	BPC006_II0135	121321..122622 [+], 1302	403521429	hypothetical protein	TssL
41	BPC006_II0136	122637..126545 [+], 3909	403521430	ImcF/SciS family protein	TssM
42	BPC006_II0137	126576..126698 [+], 123	403521431	hypothetical protein
43	BPC006_II0138	126735..127304 [+], 570	403521432	hypothetical protein
44	BPC006_II0139	127450..130092 [+], 2643	403521433	Rhs element Vgr protein	TssI
45	BPC006_II0140	130188..130436 [+], 249	403521434	PAAR motif-containing protein	PAAR
46	BPC006_II0141	130529..133954 [+], 3426	403521435	YD repeat-/RHS repeat-containing protein
47	BPC006_II0142	135238..136266 [-], 1029	403521436	hypothetical protein
48	BPC006_II0144	137410..138459 [-], 1050	403521437	hypothetical protein	TssG
49	BPC006_II0145	138456..140336 [-], 1881	403521438	hypothetical protein	TssF
50	BPC006_II0146	140338..140856 [-], 519	403521439	hypothetical protein	TssE
51	BPC006_II0147	140843..141649 [-], 807	403521440	ImpE/SciE family protein	TagJ
52	BPC006_II0148	141681..142736 [-], 1056	403521441	hypothetical protein
53	BPC006_II0149	142742..142891 [+], 150	403521442	hypothetical protein
54	BPC006_II0150	143082..145811 [+], 2730	403521443	chaperone clpB	TssH
55	BPC006_II0151	146074..146193 [+], 120	403521444	hypothetical protein
56	BPC006_II0152	146202..149300 [-], 3099	403521445	response regulator/sensor histidine kinase
57	BPC006_II0153	150031..150147 [-], 117	403521446	hypothetical protein
58	BPC006_II0154	150504..150596 [+], 93	403521447	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A