I. Summary

SecReT6 ID	695
Strain	Burkholderia pseudomallei BPC006
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_018529
Location	220065..242493
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BPC006_II0221	215661..216656 [+], 996	403521514	zinc-binding dehydrogenase family oxidoreductase
2	BPC006_II0222	216711..217637 [+], 927	403521515	aromatic ring-opening dioxygenase
3	BPC006_II0223	217881..219227 [-], 1347	403521516	LysR family transcriptional regulator
4	BPC006_II0224	219812..220045 [-], 234	403521517	hypothetical protein
5	BPC006_II0225	220065..224141 [-], 4077	403521518	ImcF/SciS family protein	TssM
6	BPC006_II0226	224170..225435 [-], 1266	403521519	hypothetical protein	TssL
7	BPC006_II0227	225524..226870 [-], 1347	403521520	hypothetical protein	TssK
8	BPC006_II0228	226892..227395 [-], 504	403521521	SciN protein	TssJ
9	BPC006_II0229	227502..227987 [-], 486	403521522	SciM protein	TssD
10	BPC006_II0230	228104..229603 [-], 1500	403521523	hypothetical protein	TssC
11	BPC006_II0231	229638..230219 [-], 582	403521524	hypothetical protein	TssB
12	BPC006_II0232	230255..233194 [-], 2940	403521525	chaperone clpB	TssH
13	BPC006_II0233	233726..234448 [+], 723	403521526	hypothetical protein
14	BPC006_II0234	234445..235410 [+], 966	403521527	ImpE/SciE family protein	TagJ
15	BPC006_II0235	235397..235978 [+], 582	403521528	hypothetical protein	TssE
16	BPC006_II0236	236008..237897 [+], 1890	403521529	hypothetical protein	TssF
17	BPC006_II0237	237897..238982 [+], 1086	403521530	hypothetical protein	TssG
18	BPC006_II0239	240166..242493 [+], 2328	403521531	Rhs element Vgr protein	TssI
19	BPC006_II0240	242525..245002 [+], 2478	403521532	pentapeptide repeat-containing protein
20	BPC006_II0241	244999..246081 [+], 1083	403521533	pentapeptide repeat-containing protein
21	BPC006_II0242	246036..246266 [+], 231	403521534	hypothetical protein
22	BPC006_II0243	246263..246922 [+], 660	403521535	hypothetical protein
23	BPC006_II0244	246963..247343 [+], 381	403521536	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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