I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BPC006_II0221 | 215661..216656 [+], 996 | 403521514 | zinc-binding dehydrogenase family oxidoreductase | |
2 | BPC006_II0222 | 216711..217637 [+], 927 | 403521515 | aromatic ring-opening dioxygenase | |
3 | BPC006_II0223 | 217881..219227 [-], 1347 | 403521516 | LysR family transcriptional regulator | |
4 | BPC006_II0224 | 219812..220045 [-], 234 | 403521517 | hypothetical protein | |
5 | BPC006_II0225 | 220065..224141 [-], 4077 | 403521518 | ImcF/SciS family protein | TssM |
6 | BPC006_II0226 | 224170..225435 [-], 1266 | 403521519 | hypothetical protein | TssL |
7 | BPC006_II0227 | 225524..226870 [-], 1347 | 403521520 | hypothetical protein | TssK |
8 | BPC006_II0228 | 226892..227395 [-], 504 | 403521521 | SciN protein | TssJ |
9 | BPC006_II0229 | 227502..227987 [-], 486 | 403521522 | SciM protein | TssD |
10 | BPC006_II0230 | 228104..229603 [-], 1500 | 403521523 | hypothetical protein | TssC |
11 | BPC006_II0231 | 229638..230219 [-], 582 | 403521524 | hypothetical protein | TssB |
12 | BPC006_II0232 | 230255..233194 [-], 2940 | 403521525 | chaperone clpB | TssH |
13 | BPC006_II0233 | 233726..234448 [+], 723 | 403521526 | hypothetical protein | |
14 | BPC006_II0234 | 234445..235410 [+], 966 | 403521527 | ImpE/SciE family protein | TagJ |
15 | BPC006_II0235 | 235397..235978 [+], 582 | 403521528 | hypothetical protein | TssE |
16 | BPC006_II0236 | 236008..237897 [+], 1890 | 403521529 | hypothetical protein | TssF |
17 | BPC006_II0237 | 237897..238982 [+], 1086 | 403521530 | hypothetical protein | TssG |
18 | BPC006_II0239 | 240166..242493 [+], 2328 | 403521531 | Rhs element Vgr protein | TssI |
19 | BPC006_II0240 | 242525..245002 [+], 2478 | 403521532 | pentapeptide repeat-containing protein | |
20 | BPC006_II0241 | 244999..246081 [+], 1083 | 403521533 | pentapeptide repeat-containing protein | |
21 | BPC006_II0242 | 246036..246266 [+], 231 | 403521534 | hypothetical protein | |
22 | BPC006_II0243 | 246263..246922 [+], 660 | 403521535 | hypothetical protein | |
23 | BPC006_II0244 | 246963..247343 [+], 381 | 403521536 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.