SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	698
Strain	Burkholderia pseudomallei BPC006
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_018529
Location	2799866..2845545
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BPC006_II2772	2798582..2799850 [-], 1269	403524050	hypothetical protein
2	BPC006_II2773	2799866..2802070 [-], 2205	403524051	Rhs element Vgr protein	TssI
3	BPC006_II2774	2802038..2802253 [+], 216	403524052	hypothetical protein
4	BPC006_II2775	2803527..2804015 [-], 489	403524053	transposase
5	BPC006_II2776	2804045..2804392 [-], 348	403524054	TnpB protein
6	BPC006_II2777	2804389..2804664 [-], 276	403524055	transposase
7	BPC006_II2778	2805229..2807262 [-], 2034	403524056	hypothetical protein
8	BPC006_II2779	2807315..2807410 [+], 96	403524057	hypothetical protein
9	BPC006_II2780	2807503..2809812 [-], 2310	403524058	alpha-galactosidase
10	BPC006_II2781	2810531..2811334 [-], 804	403524059	carbohydrate ABC transporter, permease protein
11	BPC006_II2782	2811517..2812716 [-], 1200	403524060	carbohydrate ABC transporter periplasmic binding protein
12	BPC006_II2783	2812794..2812898 [-], 105	403524061	carbohydrate ABC transporter ATP-binding protein
13	BPC006_II2784	2813457..2813570 [+], 114	403524062	hypothetical protein
14	BPC006_II2785	2814081..2815946 [-], 1866	403524063	hypothetical protein
15	BPC006_II2786	2816492..2817166 [-], 675	403524064	LacI family transcriptional regulator
16	BPC006_II2787	2817954..2818211 [+], 258	403524065	transposase
17	BPC006_II2788	2818988..2819728 [+], 741	403524066	hypothetical protein
18	BPC006_II2789	2820460..2821719 [-], 1260	403524067	substrate-binding repeat-containing protein
19	BPC006_II2790	2821679..2822347 [-], 669	403524068	hypothetical protein
20	BPC006_II2791	2822405..2824600 [-], 2196	403524069	Rhs element Vgr protein	TssI
21	BPC006_II2792	2824606..2827272 [-], 2667	403524070	ATP-dependent Clp protease, ATP-binding subunit ClpB	TssH
22	BPC006_II2793	2827285..2828730 [-], 1446	403524071	hypothetical protein	TssG
23	BPC006_II2794	2828727..2830598 [-], 1872	403524072	hypothetical protein	TssF
24	BPC006_II2795	2830603..2831151 [-], 549	403524073	hypothetical protein	TssE
25	BPC006_II2796	2831170..2831661 [-], 492	403524074	hypothetical protein	TssD
26	BPC006_II2797	2831721..2833229 [-], 1509	403524075	hypothetical protein	TssC
27	BPC006_II2798	2833222..2833800 [-], 579	403524076	hypothetical protein	TssB
28	BPC006_II2800	2834995..2837580 [-], 2586	403524077	protein kinase
29	BPC006_II2801	2837579..2837806 [+], 228	403524078	hypothetical protein
30	BPC006_II2802	2837791..2838750 [-], 960	403524079	hypothetical protein
31	BPC006_II2803	2838747..2842376 [-], 3630	403524080	ImcF-related protein	TssM
32	BPC006_II2804	2842379..2843695 [-], 1317	403524081	hypothetical protein	TssL
33	BPC006_II2805	2843711..2845114 [-], 1404	403524082	hypothetical protein	TssK
34	BPC006_II2806	2845111..2845545 [-], 435	403524083	lipoprotein	TssJ
35	BPC006_II2807	2846137..2846670 [+], 534	403524084	lipoprotein
36	BPC006_II2808	2846725..2848161 [+], 1437	403524085	FHA domain-containing protein	Fha
37	BPC006_II2809	2848205..2850109 [-], 1905	403524086	hypothetical protein
38	BPC006_II2810	2850128..2850313 [+], 186	403524087	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A