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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BPC006_II2772 | 2798582..2799850 [-], 1269 | 403524050 | hypothetical protein | |
2 | BPC006_II2773 | 2799866..2802070 [-], 2205 | 403524051 | Rhs element Vgr protein | TssI |
3 | BPC006_II2774 | 2802038..2802253 [+], 216 | 403524052 | hypothetical protein | |
4 | BPC006_II2775 | 2803527..2804015 [-], 489 | 403524053 | transposase | |
5 | BPC006_II2776 | 2804045..2804392 [-], 348 | 403524054 | TnpB protein | |
6 | BPC006_II2777 | 2804389..2804664 [-], 276 | 403524055 | transposase | |
7 | BPC006_II2778 | 2805229..2807262 [-], 2034 | 403524056 | hypothetical protein | |
8 | BPC006_II2779 | 2807315..2807410 [+], 96 | 403524057 | hypothetical protein | |
9 | BPC006_II2780 | 2807503..2809812 [-], 2310 | 403524058 | alpha-galactosidase | |
10 | BPC006_II2781 | 2810531..2811334 [-], 804 | 403524059 | carbohydrate ABC transporter, permease protein | |
11 | BPC006_II2782 | 2811517..2812716 [-], 1200 | 403524060 | carbohydrate ABC transporter periplasmic binding protein | |
12 | BPC006_II2783 | 2812794..2812898 [-], 105 | 403524061 | carbohydrate ABC transporter ATP-binding protein | |
13 | BPC006_II2784 | 2813457..2813570 [+], 114 | 403524062 | hypothetical protein | |
14 | BPC006_II2785 | 2814081..2815946 [-], 1866 | 403524063 | hypothetical protein | |
15 | BPC006_II2786 | 2816492..2817166 [-], 675 | 403524064 | LacI family transcriptional regulator | |
16 | BPC006_II2787 | 2817954..2818211 [+], 258 | 403524065 | transposase | |
17 | BPC006_II2788 | 2818988..2819728 [+], 741 | 403524066 | hypothetical protein | |
18 | BPC006_II2789 | 2820460..2821719 [-], 1260 | 403524067 | substrate-binding repeat-containing protein | |
19 | BPC006_II2790 | 2821679..2822347 [-], 669 | 403524068 | hypothetical protein | |
20 | BPC006_II2791 | 2822405..2824600 [-], 2196 | 403524069 | Rhs element Vgr protein | TssI |
21 | BPC006_II2792 | 2824606..2827272 [-], 2667 | 403524070 | ATP-dependent Clp protease, ATP-binding subunit ClpB | TssH |
22 | BPC006_II2793 | 2827285..2828730 [-], 1446 | 403524071 | hypothetical protein | TssG |
23 | BPC006_II2794 | 2828727..2830598 [-], 1872 | 403524072 | hypothetical protein | TssF |
24 | BPC006_II2795 | 2830603..2831151 [-], 549 | 403524073 | hypothetical protein | TssE |
25 | BPC006_II2796 | 2831170..2831661 [-], 492 | 403524074 | hypothetical protein | TssD |
26 | BPC006_II2797 | 2831721..2833229 [-], 1509 | 403524075 | hypothetical protein | TssC |
27 | BPC006_II2798 | 2833222..2833800 [-], 579 | 403524076 | hypothetical protein | TssB |
28 | BPC006_II2800 | 2834995..2837580 [-], 2586 | 403524077 | protein kinase | |
29 | BPC006_II2801 | 2837579..2837806 [+], 228 | 403524078 | hypothetical protein | |
30 | BPC006_II2802 | 2837791..2838750 [-], 960 | 403524079 | hypothetical protein | |
31 | BPC006_II2803 | 2838747..2842376 [-], 3630 | 403524080 | ImcF-related protein | TssM |
32 | BPC006_II2804 | 2842379..2843695 [-], 1317 | 403524081 | hypothetical protein | TssL |
33 | BPC006_II2805 | 2843711..2845114 [-], 1404 | 403524082 | hypothetical protein | TssK |
34 | BPC006_II2806 | 2845111..2845545 [-], 435 | 403524083 | lipoprotein | TssJ |
35 | BPC006_II2807 | 2846137..2846670 [+], 534 | 403524084 | lipoprotein | |
36 | BPC006_II2808 | 2846725..2848161 [+], 1437 | 403524085 | FHA domain-containing protein | Fha |
37 | BPC006_II2809 | 2848205..2850109 [-], 1905 | 403524086 | hypothetical protein | |
38 | BPC006_II2810 | 2850128..2850313 [+], 186 | 403524087 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein