I. Summary

SecReT6 ID	699
Strain	Escherichia coli O104:H4 str. 2009EL-2050
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018650
Location	882313..910668
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	1	1	1	2	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	O3M_04285	877943..878155 [+], 213	410480990	hemolysin expression-modulating protein
2	O3M_04290	878772..879341 [+], 570	410480991	hypothetical protein
3	O3M_04295	879509..879892 [+], 384	410480992	hypothetical protein
4	O3M_04300	879882..880301 [+], 420	410480993	hypothetical protein
5	O3M_04305	880307..880489 [+], 183	410480994	hypothetical protein
6	O3M_04310	880610..881233 [+], 624	410480995	hypothetical protein
7	O3M_04315	881329..881562 [+], 234	410480996	hypothetical protein
8	O3M_04320	881615..881806 [-], 192	410480997	hypothetical protein
9	O3M_04325	882313..882810 [+], 498	410480998	hypothetical protein	TssB
10	O3M_04330	882832..884193 [+], 1362	410480999	hypothetical protein	TssC
11	O3M_04335	884295..885539 [+], 1245	410481000	hypothetical protein
12	O3M_04340	885856..887520 [+], 1665	410481001	UvrD/REP helicase
13	O3M_04345	887582..887890 [+], 309	410481002	hypothetical protein
14	O3M_04350	887945..888172 [+], 228	410481003	transcriptional regulator IbrB
15	O3M_04355	888251..888520 [+], 270	410481004	transcriptional regulator
16	O3M_04360	888541..889185 [+], 645	410481005	hypothetical protein
17	O3M_04365	889251..889574 [+], 324	410481006	hypothetical protein
18	O3M_04370	889628..890023 [-], 396	410481007	hypothetical protein
19	O3M_04380	890394..890780 [+], 387	410481008	hypothetical protein
20	O3M_04400	892301..892777 [+], 477	410481009	hypothetical protein	TssB
21	O3M_04405	892780..894258 [+], 1479	410481010	hypothetical protein	TssC
22	O3M_04410	894268..894774 [+], 507	410481011	hypothetical protein	AaiC (e)
23	O3M_04415	894784..895206 [+], 423	410481012	hypothetical protein	TssE
24	O3M_04420	895242..895538 [-], 297	410481013	hypothetical protein
25	O3M_04425	895670..897001 [+], 1332	410481014	hypothetical protein	TssF
26	O3M_04430	896992..897924 [+], 933	410481015	hypothetical protein	TssG
27	O3M_04435	897937..899919 [+], 1983	410481016	hypothetical protein	TssI
28	O3M_04440	899930..900397 [+], 468	410481017	hypothetical protein
29	O3M_04445	900401..900706 [+], 306	410481018	hypothetical protein	PAAR
30	O3M_04450	900710..901786 [+], 1077	410481019	hypothetical protein	TssA
31	O3M_04455	901794..902345 [+], 552	410481020	hypothetical protein	TssJ
32	O3M_04460	902364..903776 [+], 1413	410481021	hypothetical protein	TssK
33	O3M_04465	903804..904118 [+], 315	410481022	hypothetical protein
34	O3M_04470	904115..904705 [+], 591	410481023	hypothetical protein	TssL
35	O3M_04475	904702..908115 [+], 3414	410481024	hypothetical protein	TssM
36	O3M_04480	908119..910668 [+], 2550	410481025	hypothetical protein	TssH
37	O3M_04490	911705..912076 [+], 372	410481026	transposase
38	O3M_04495	913834..914400 [+], 567	410481027	hypothetical protein
39	O3M_04500	914545..914778 [-], 234	410481028	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4564

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	O3M_04410	894268..894774 [+], 507	410481011	hypothetical protein	EC042_4564

Download FASTA format files

Proteins        Genes

N/A

N/A