 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BMA_RS19500 | 732317..732814 [-], 498 | 490306826 | hypothetical protein | |
2 | BMA_RS19505 | 732932..733816 [-], 885 | 490387224 | metal-dependent hydrolase | |
3 | BMA_RS19510 | 733927..735047 [-], 1121 | 741020948 | IS3 family transposase | |
4 | BMA_RS19515 | 735241..735548 [-], 308 | pseudogene | DDE-type integrase/transposase/recombinase | |
5 | BMA_RS19520 | 735641..736273 [-], 633 | 490663813 | GTP cyclohydrolase I | |
6 | BMA_RS19525 | 736278..736571 [-], 294 | 490687372 | type VI secretion system protein TssN | |
7 | BMA_RS19530 | 736530..736775 [+], 246 | 490306833 | hypothetical protein | |
8 | BMA_RS19535 | 736735..737958 [-], 1224 | 1807434233 | Ig-like domain-containing protein | |
9 | BMA_RS19540 (tssM-5) | 738692..742738 [-], 4047 | 1859203766 | type VI secretion system membrane subunit TssM-5 | |
10 | BMA_RS19545 | 742735..743400 [-], 666 | 490289278 | type VI secretion system protein TssL | |
11 | BMA_RS19550 (tssK) | 743397..744794 [-], 1398 | 490311820 | type VI secretion system baseplate subunit TssK | |
12 | BMA_RS19555 (tssJ) | 744827..745624 [-], 798 | 490305833 | type VI secretion system lipoprotein TssJ | |
13 | BMA_RS19560 | 745634..746026 [-], 393 | 490305834 | type VI secretion system protein TssI | |
14 | BMA_RS19565 | 746055..746816 [-], 762 | 490305837 | type VI secretion system protein TssH | |
15 | BMA_RS19570 | 746813..747877 [-], 1065 | 490311822 | type VI secretion system protein TssG | |
16 | BMA_RS19575 | 747895..750537 [-], 2643 | 490311823 | type VI secretion system protein TssF | |
17 | BMA_RS19580 (tssI) | 750563..753586 [-], 3024 | 490289303 | type VI secretion system tip protein VgrG | |
18 | BMA_RS19585 | 753613..756696 [-], 3084 | 490305838 | AAA family ATPase | |
19 | BMA_RS19590 (tssG) | 756683..757705 [-], 1023 | 490305839 | type VI secretion system baseplate subunit TssG | |
20 | BMA_RS19595 (tssF) | 757693..759435 [-], 1743 | 490305840 | type VI secretion system baseplate subunit TssF | |
21 | BMA_RS19600 (tssE) | 759472..759933 [-], 462 | 490289134 | type VI secretion system baseplate subunit TssE | |
22 | BMA_RS19605 (hcp1) | 759926..760435 [-], 510 | 490305841 | type VI secretion system effector Hcp1 | |
23 | BMA_RS19610 (tssC) | 760655..762181 [-], 1527 | 490305843 | type VI secretion system contractile sheath large subunit | |
24 | BMA_RS19615 (tssB) | 762178..762672 [-], 495 | 490305844 | type VI secretion system contractile sheath small subunit | |
25 | BMA_RS19620 | 762932..764776 [+], 1845 | 490305845 | MASE1 domain-containing protein | |
26 | BMA_RS19625 | 764773..765510 [+], 738 | 490311617 | response regulator transcription factor | |
27 | BMA_RS19630 (tssA) | 765501..767435 [+], 1935 | 490305847 | type VI secretion system protein TssA | |
28 | BMA_RS19635 | 767778..768155 [-], 378 | 490289131 | hypothetical protein | |
29 | BMA_RS19640 | 768235..769356 [-], 1122 | 490386950 | YadA-like family protein | |
30 | BMA_RS19645 | 769385..770746 [-], 1362 | 490305851 | autotransporter strand-loop-strand O-heptosyltransferase | |
31 | BMA_RS19650 | 770893..771918 [-], 1026 | 490311629 | N-acetylmuramoyl-L-alanine amidase | |
32 | BMA_RS19655 | 772063..772452 [-], 390 | 490289046 | hypothetical protein | |
33 | BMA_RS19660 | 772957..773571 [-], 615 | 490305853 | SCO family protein | |
34 | BMA_RS19665 | 773568..774404 [-], 837 | 490305854 | formylglycine-generating enzyme family protein | |
35 | BMA_RS19670 (nirK) | 774429..775991 [-], 1563 | 490305855 | nitrite reductase, copper-containing | |
36 | BMA_RS19675 | 776399..776839 [-], 441 | 490289301 | SRPBCC family protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein