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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | O3M_20185 (prfH) | 4142596..4143210 [-], 615 | 410484114 | peptide chain release factor-like protein | |
2 | O3M_20190 | 4143207..4144346 [-], 1140 | 410484115 | hypothetical protein | |
3 | O3M_20195 | 4144592..4145044 [-], 453 | 410484116 | acyltransferase | |
4 | O3M_20200 | 4145041..4146096 [-], 1056 | 410484117 | DNA polymerase IV | |
5 | O3M_20205 | 4146167..4146952 [-], 786 | 410484118 | hypothetical protein | TagL |
6 | O3M_20210 | 4146897..4148636 [+], 1740 | 410484119 | flagellar system protein | |
7 | O3M_20215 | 4148741..4149019 [+], 279 | 410484120 | hypothetical protein | |
8 | O3M_20220 | 4149012..4149368 [+], 357 | 410484121 | HicB protein | |
9 | O3M_20225 | 4149425..4150174 [-], 750 | 410484122 | hydrolase | |
10 | O3M_20230 | 4150384..4150644 [+], 261 | 410484123 | DNA-damage-inducible protein J | |
11 | O3M_20235 | 4150647..4150925 [+], 279 | 410484124 | toxin of the YafQ-DinJ toxin-antitoxin system | |
12 | O3M_20240 | 4151081..4151821 [+], 741 | 410484125 | hypothetical protein | |
13 | O3M_20245 | 4151792..4152559 [-], 768 | 410484126 | amidotransferase | |
14 | O3M_20250 (gmhA) | 4152765..4153343 [-], 579 | 410484127 | phosphoheptose isomerase | |
15 | O3M_20255 (fadE) | 4153583..4156027 [+], 2445 | 410484128 | acyl-CoA dehydrogenase | |
16 | O3M_20260 | 4156070..4156543 [-], 474 | 410484129 | C-lysozyme inhibitor | |
17 | O3M_20265 | 4156697..4157467 [+], 771 | 410484130 | C-N hydrolase family amidase | |
18 | O3M_20270 | 4157509..4158570 [-], 1062 | 410484131 | transposase | |
19 | O3M_20285 | 4160055..4160537 [-], 483 | 410484132 | hypothetical protein | |
20 | O3M_20290 | 4160521..4161711 [-], 1191 | 410484133 | Rhs Core protein | |
21 | O3M_20295 | 4161680..4164184 [-], 2505 | 410484134 | Rhs core protein | PAAR |
22 | O3M_20300 | 4164260..4166401 [-], 2142 | 410484135 | hypothetical protein | TssI |
23 | O3M_20305 | 4166611..4167129 [-], 519 | 410484136 | hypothetical protein | TssD |
24 | O3M_20310 | 4167256..4167399 [-], 144 | 410484137 | hypothetical protein | |
25 | O3M_20315 | 4167826..4168326 [+], 501 | 410484138 | hypothetical protein | TssB |
26 | O3M_20320 | 4168361..4168585 [+], 225 | 410484139 | hypothetical protein | TssC |
27 | O3M_20325 | 4168636..4170111 [+], 1476 | 410484140 | hypothetical protein | TssC |
28 | O3M_20330 | 4170118..4170531 [+], 414 | 410484141 | hypothetical protein | TssE |
29 | O3M_20335 | 4170535..4172385 [+], 1851 | 410484142 | type VI secretion system protein ImpG | TssF |
30 | O3M_20340 | 4172349..4173431 [+], 1083 | 410484143 | hypothetical protein | TssG |
31 | O3M_20345 | 4173456..4174736 [+], 1281 | 410484144 | type VI secretion system protein ImpI | Fha |
32 | O3M_20350 | 4174733..4175257 [+], 525 | 410484145 | lipoprotein | TssJ |
33 | O3M_20355 | 4175260..4176591 [+], 1332 | 410484146 | hypothetical protein | TssK |
34 | O3M_20360 | 4176596..4177357 [+], 762 | 410484147 | membrane protein Aec26 | TssL |
35 | O3M_20365 | 4177366..4180125 [+], 2760 | 410484148 | ATP-dependent Clp proteinase ATP-binding subunit | TssH |
36 | O3M_20370 | 4180122..4180865 [+], 744 | 410484149 | hypothetical protein | |
37 | O3M_20375 | 4180870..4182285 [+], 1416 | 410484150 | hypothetical protein | |
38 | O3M_20380 | 4182304..4185828 [+], 3525 | 410484151 | IcmF-like protein | TssM |
39 | O3M_20385 | 4185839..4187191 [+], 1353 | 410484152 | hypothetical protein | TssA |
40 | O3M_20390 | 4187215..4187697 [+], 483 | 410484153 | hypothetical protein | TssD |
41 | O3M_20395 | 4187741..4188655 [+], 915 | 410484154 | hypothetical protein | |
42 | O3M_20400 | 4188665..4189144 [+], 480 | 410484155 | hypothetical protein | |
43 | O3M_20405 | 4189281..4190066 [-], 786 | 410484156 | aminopeptidase | |
44 | O3M_20410 | 4190602..4191333 [-], 732 | 410484157 | DNA polymerase III subunit epsilon | |
45 | O3M_20415 (rnhA) | 4191398..4191865 [+], 468 | 410484158 | ribonuclease H | |
46 | O3M_20420 | 4191862..4192584 [-], 723 | 410484159 | S-adenosyl-L-methionine-dependent methyltransferase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein