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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | O3O_05095 (prfH) | 4201568..4202182 [-], 615 | 407467709 | peptide chain release factor-like protein | |
2 | O3O_05090 | 4202179..4203318 [-], 1140 | 407467708 | hypothetical protein | |
3 | O3O_05085 | 4203564..4204016 [-], 453 | 407467707 | acyltransferase | |
4 | O3O_05080 | 4204013..4205068 [-], 1056 | 407467706 | DNA polymerase IV | |
5 | O3O_05075 | 4205139..4205924 [-], 786 | 407467705 | hypothetical protein | TagL |
6 | O3O_05070 | 4205869..4207608 [+], 1740 | 407467704 | flagellar system protein | |
7 | O3O_05065 | 4207713..4207991 [+], 279 | 407467703 | hypothetical protein | |
8 | O3O_05060 | 4207984..4208340 [+], 357 | 407467702 | HicB | |
9 | O3O_05055 | 4208397..4209146 [-], 750 | 407467701 | hydrolase | |
10 | O3O_05050 | 4209356..4209616 [+], 261 | 407467700 | DNA-damage-inducible protein J | |
11 | O3O_05045 | 4209619..4209897 [+], 279 | 407467699 | toxin of the YafQ-DinJ toxin-antitoxin system | |
12 | O3O_05040 | 4210053..4210793 [+], 741 | 407467698 | hypothetical protein | |
13 | O3O_05035 | 4210764..4211531 [-], 768 | 407467697 | amidotransfease | |
14 | O3O_05030 (gmhA) | 4211737..4212315 [-], 579 | 407467696 | phosphoheptose isomerase | |
15 | O3O_05025 (fadE) | 4212555..4214999 [+], 2445 | 407467695 | acyl-CoA dehydrogenase | |
16 | O3O_05020 | 4215042..4215515 [-], 474 | 407467694 | C-lysozyme inhibitor | |
17 | O3O_05015 | 4215669..4216439 [+], 771 | 407467693 | C-N hydrolase family amidase | |
18 | O3O_05010 | 4216481..4217524 [-], 1044 | 407467692 | transposase | |
19 | O3O_04995 | 4219027..4219509 [-], 483 | 407467691 | hypothetical protein | |
20 | O3O_04990 | 4219493..4220683 [-], 1191 | 407467690 | Rhs Core protein | |
21 | O3O_04985 | 4220652..4223156 [-], 2505 | 407467689 | Rhs core protein | PAAR |
22 | O3O_04980 | 4223232..4225373 [-], 2142 | 407467688 | hypothetical protein | TssI |
23 | O3O_04975 | 4225583..4226101 [-], 519 | 407467687 | hypothetical protein | TssD |
24 | O3O_04970 | 4226228..4226371 [-], 144 | 407467686 | hypothetical protein | |
25 | O3O_04965 | 4226798..4227298 [+], 501 | 407467685 | hypothetical protein | TssB |
26 | O3O_04960 | 4227333..4227557 [+], 225 | 407467684 | hypothetical protein | TssC |
27 | O3O_04955 | 4227608..4229083 [+], 1476 | 407467683 | hypothetical protein | TssC |
28 | O3O_04950 | 4229090..4229503 [+], 414 | 407467682 | hypothetical protein | TssE |
29 | O3O_04945 | 4229507..4231357 [+], 1851 | 407467681 | type VI secretion system protein ImpG | TssF |
30 | O3O_04940 | 4231321..4232403 [+], 1083 | 407467680 | hypothetical protein | TssG |
31 | O3O_04935 | 4232428..4233708 [+], 1281 | 407467679 | type VI secretion system protein ImpI | Fha |
32 | O3O_04930 | 4233705..4234229 [+], 525 | 407467678 | lipoprotein | TssJ |
33 | O3O_04925 | 4234232..4235563 [+], 1332 | 407467677 | hypothetical protein | TssK |
34 | O3O_04920 | 4235568..4236329 [+], 762 | 407467676 | membrane protein Aec26 | TssL |
35 | O3O_04915 | 4236338..4239097 [+], 2760 | 407467675 | ATP-dependent Clp proteinase ATP-binding subunit | TssH |
36 | O3O_04910 | 4239094..4239837 [+], 744 | 407467674 | hypothetical protein | |
37 | O3O_04905 | 4239842..4241257 [+], 1416 | 407467673 | hypothetical protein | TssA |
38 | O3O_04900 | 4241276..4244800 [+], 3525 | 407467672 | IcmF-like protein | TssM |
39 | O3O_04895 | 4244811..4246163 [+], 1353 | 407467671 | hypothetical protein | TssA |
40 | O3O_04890 | 4246187..4246669 [+], 483 | 407467670 | hypothetical protein | TssD |
41 | O3O_04885 | 4246713..4247627 [+], 915 | 407467669 | hypothetical protein | |
42 | O3O_04880 | 4247637..4248116 [+], 480 | 407467668 | hypothetical protein | |
43 | O3O_04875 | 4248253..4249038 [-], 786 | 407467667 | aminopeptidase | |
44 | O3O_04870 | 4249574..4250305 [-], 732 | 407467666 | DNA polymerase III subunit epsilon | |
45 | O3O_04865 (rnhA) | 4250370..4250837 [+], 468 | 407467665 | ribonuclease H | |
46 | O3O_04860 | 4250834..4251556 [-], 723 | 407467664 | S-adenosyl-L-methionine-dependent methyltransferase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein