I. Summary

SecReT6 ID	706
Strain	Alcanivorax dieselolei B5
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018691
Location	2393958..2416862
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	B5T_02181	2389757..2390548 [+], 792	407696010	D-alanyl-D-alanine carboxypeptidase
2	B5T_02182	2390729..2392021 [+], 1293	407696011	Rhs element Vgr protein	PAAR
3	B5T_02183	2392018..2392497 [+], 480	407696012	hypothetical protein
4	B5T_02184	2392528..2393949 [+], 1422	407696013	transmembrane protein
5	B5T_02185	2393958..2397710 [+], 3753	407696014	transmembrane protein	TssM
6	B5T_02186	2397703..2398701 [+], 999	407696015	type VI secretion-associated protein, family
7	B5T_02187	2398698..2399483 [+], 786	407696016	outer membrane protein-related peptidoglycan-associated (lipo)protein	TagL
8	B5T_02188	2399503..2400546 [-], 1044	407696017	protein ImpA	TssA
9	B5T_02189	2400578..2401369 [-], 792	407696018	transmembrane protein	TssL
10	B5T_02190	2401366..2402712 [-], 1347	407696019	hypothetical protein	TssK
11	B5T_02191	2402846..2403430 [-], 585	407696020	transmembrane protein	TssJ
12	B5T_02192	2404019..2404555 [+], 537	407696021	hypothetical protein
13	B5T_02193	2404591..2405106 [+], 516	407696022	hypothetical protein	TssB
14	B5T_02194	2405112..2406602 [+], 1491	407696023	hypothetical protein	TssC
15	B5T_02195	2406726..2407217 [+], 492	407696024	Hcp family protein	TssD
16	B5T_02196	2407334..2407843 [+], 510	407696025	type VI secretion system lysozyme-like protein	TssE
17	B5T_02197	2407846..2409681 [+], 1836	407696026	type VI secretion protein	TssF
18	B5T_02198	2409645..2410739 [+], 1095	407696027	quinoprotein dehydrogenase	TssG
19	B5T_02199	2410779..2413481 [+], 2703	407696028	type VI secretion ATPase, ClpV1 family	TssH
20	B5T_02200	2413478..2413828 [+], 351	407696029	hypothetical protein
21	B5T_02201	2413896..2416862 [+], 2967	407696030	Rhs element Vgr protein	TssI
22	B5T_02202	2417371..2417838 [+], 468	407696031	hypothetical protein
23	B5T_02203	2417835..2420672 [+], 2838	407696032	hypothetical protein
24	B5T_02204	2421037..2421729 [+], 693	407696033	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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