I. Summary

SecReT6 ID	707
Strain	Burkholderia phenoliruptrix BR3459a
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_018695
Location	1352649..1380393
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BUPH_01730	1347918..1348727 [+], 810	407712923	branched-chain amino acid transport system ATP-binding protein
2	BUPH_01731	1348975..1350225 [+], 1251	407712924	D-alanyl-D-alanine carboxypeptidase
3	BUPH_01732	1350266..1350988 [-], 723	407712925	abortive infection protein
4	BUPH_01733	1351417..1352448 [+], 1032	407712926	alpha/beta fold family hydrolase
5	BUPH_01734	1352649..1353080 [-], 432	407712927	type VI secretion system protein	TssE
6	BUPH_01735	1353093..1355831 [-], 2739	407712928	type VI secretion system protein VasG	TssH
7	BUPH_01736	1355929..1356414 [-], 486	407712929	type VI secretion system secreted protein Hcp	TssD
8	BUPH_01737	1356578..1358221 [-], 1644	407712930	OmpA/MotB domain-containing protein	TagL
9	BUPH_01738	1358296..1359039 [-], 744	407712931	type VI secretion system protein ImpK	TssL
10	BUPH_01739	1359036..1360367 [-], 1332	407712932	type VI secretion system protein ImpJ	TssK
11	BUPH_01740	1361032..1361463 [+], 432	407712933	type VI secretion system protein ImpB	TssB
12	BUPH_01741	1361536..1363068 [+], 1533	407712934	type VI secretion system protein ImpC	TssC
13	BUPH_01742	1363152..1365491 [+], 2340	407712935	rhs element Vgr protein	TssI
14	BUPH_01743	1365498..1368077 [+], 2580	407712936	chitinase-like protein
15	BUPH_01744	1370474..1371712 [+], 1239	407712937	hypothetical protein
16	BUPH_06575	1371709..1375293 [+], 3585	407712938	hypothetical protein	TssM
17	BUPH_01746	1375290..1376882 [+], 1593	407712939	type VI secretion system protein VasJ	TssA
18	BUPH_01747	1376893..1378719 [+], 1827	407712940	type VI secretion system protein ImpG	TssF
19	BUPH_01748	1378716..1379849 [+], 1134	407712941	type VI secretion system protein ImpH	TssG
20	BUPH_01749	1379863..1380393 [+], 531	407712942	type VI secretion system protein VasD	TssJ
21	BUPH_01750	1380607..1381242 [-], 636	407712943	nitroreductase
22	BUPH_01751	1381550..1381783 [+], 234	407712944	MbtH protein
23	BUPH_01752	1381787..1382680 [+], 894	407712945	thioesterase
24	BUPH_01753	1382745..1384187 [+], 1443	407712946	cupin
25	BUPH_01754	1384358..1385248 [+], 891	407712947	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BUPH_01736	1355929..1356414 [-], 486	407712929	type VI secretion system secreted protein Hcp	EC042_4529

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Proteins        Genes

N/A

N/A