I. Summary

SecReT6 ID	708
Strain	Acinetobacter baumannii TYTH-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018706
Location	1760737..1780148
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	M3Q_1661	1756617..1757498 [-], 882	407932341	nitrate/sulfonate/bicarbonate ABC transporter ATPase
2	M3Q_1662	1757498..1758442 [-], 945	407932342	nitrate/sulfonate/bicarbonate ABC transporter permease
3	M3Q_1663	1758538..1758939 [-], 402	407932343	hypothetical protein
4	M3Q_1664	1760259..1760720 [+], 462	407932344	signal peptide protein
5	M3Q_1665	1760737..1761240 [+], 504	407932345	hypothetical protein	TssB
6	M3Q_1666	1761233..1762714 [+], 1482	407932346	hypothetical protein	TssC
7	M3Q_1667	1762764..1763267 [+], 504	407932347	hypothetical protein	TssD
8	M3Q_1668	1763347..1763823 [+], 477	407932348	hypothetical protein	TssE
9	M3Q_1669	1764074..1765651 [+], 1578	407932349	hypothetical protein	TssF
10	M3Q_1670	1765615..1766613 [+], 999	407932350	hypothetical protein	TssG
11	M3Q_1671	1766610..1768022 [+], 1413	407932351	hypothetical protein
12	M3Q_1672	1768053..1771877 [+], 3825	407932352	hypothetical protein	TssM
13	M3Q_1673	1771879..1772874 [+], 996	407932353	hypothetical protein
14	M3Q_1674	1772877..1773644 [+], 768	407932354	outer membrane lipoprotein	TagL
15	M3Q_1675	1773661..1773924 [+], 264	407932355	hypothetical protein	PAAR
16	M3Q_1676	1774147..1776825 [+], 2679	407932356	chaperone ATPase	TssH
17	M3Q_1677	1776849..1777943 [+], 1095	407932357	hypothetical protein	TssA
18	M3Q_1678	1777960..1779324 [+], 1365	407932358	hypothetical protein	TssK
19	M3Q_1679	1779342..1780148 [+], 807	407932359	hypothetical protein	TssL
20	M3Q_1680	1780161..1780763 [+], 603	407932360	hypothetical protein
21	M3Q_1681	1780771..1781724 [+], 954	407932361	hypothetical protein
22	M3Q_1682	1781727..1782578 [-], 852	407932362	transcriptional regulator
23	M3Q_1683	1782730..1783398 [+], 669	407932363	ankyrin repeat-containing protein
24	M3Q_1684	1783666..1783896 [+], 231	407932364	guanine deaminase
25	M3Q_1685	1783896..1785074 [+], 1179	407932365	cyanate permease

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

A1S_1296

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	M3Q_1667	1762764..1763267 [+], 504	407932347	hypothetical protein	A1S_1296

Download FASTA format files

Proteins        Genes

N/A

N/A