I. Summary

SecReT6 ID	711
Strain	Simiduia agarivorans SA1 = DSM 21679
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_018868
Location	970710..993136
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	M5M_04395	966119..968680 [-], 2562	410663445	protein kinase
2	M5M_04400	969062..970636 [+], 1575	410663446	FHA domain-containing protein	Fha
3	M5M_04405	970710..971159 [+], 450	410663447	hypothetical protein	TssJ
4	M5M_04410	971193..972527 [+], 1335	410663448	hypothetical protein	TssK
5	M5M_04415	972531..973352 [+], 822	410663449	hypothetical protein	TssL
6	M5M_04420	973379..976915 [+], 3537	410663450	hypothetical protein	TssM
7	M5M_04425	976912..977574 [+], 663	410663451	type VI secretion-associated protein, BMA_A0400 family
8	M5M_04430	977800..979041 [+], 1242	410663452	type VI secretion-associated protein, ImpA family	TssA
9	M5M_04435	979090..979608 [+], 519	410663453	type VI secretion protein	TssB
10	M5M_04440	979611..981098 [+], 1488	410663454	type VI secretion protein, EvpB/family	TssC
11	M5M_04445	981162..982673 [+], 1512	410663455	type VI secretion protein, EvpB/family	TssC
12	M5M_04450	982675..983148 [+], 474	410663456	hypothetical protein	TssE
13	M5M_04455	983145..984974 [+], 1830	410663457	hypothetical protein	TssF
14	M5M_04460	984938..986080 [+], 1143	410663458	hypothetical protein	TssG
15	M5M_04465	986090..988741 [+], 2652	410663459	type VI secretion ATPase, ClpV1 family protein	TssH
16	M5M_04470	988827..989681 [-], 855	410663460	Tfp pilus assembly protein, major pilin PilA
17	M5M_04475	989726..990019 [-], 294	410663461	hypothetical protein	PAAR
18	M5M_04480	990012..990584 [-], 573	410663462	secreted protein
19	M5M_04485	990635..992521 [-], 1887	410663463	hypothetical protein	TssI
20	M5M_04490	992648..993136 [-], 489	410663464	hemolysin-coregulated protein	TssD
21	M5M_04495	993501..996080 [-], 2580	410663465	hypothetical protein
22	M5M_04500	996112..996615 [-], 504	410663466	CMP/dCMP deaminase zinc-binding protein
23	M5M_04505	996605..997426 [-], 822	410663467	Ribosomal RNA large subunit methyltransferase A (rRNA (guanine-N(1)-)-methyltransferase) (23S rRNA m1G745 methyltransferase)
24	M5M_04510	997408..997653 [-], 246	410663468	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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