I. Summary

SecReT6 ID	712
Strain	Bordetella bronchiseptica 253
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_019382
Location	2841413..2870748
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BN112_2620	2836581..2837993 [-], 1413	412339917	lipoprotein
2	BN112_2621	2838167..2839333 [-], 1167	412339918	calcium/proton antiporter
3	BN112_2622	2839431..2840657 [-], 1227	412339919	hypothetical protein
4	BN112_2623	2840682..2841416 [-], 735	412339920	hypothetical protein
5	BN112_2624	2841413..2845018 [-], 3606	412339921	hypothetical protein	TssM
6	BN112_2625	2845015..2846295 [-], 1281	412339922	outer membrane protein	TssL
7	BN112_2626	2846316..2847650 [-], 1335	412339923	hypothetical protein	TssK
8	BN112_2627	2847696..2848238 [-], 543	412339924	lipoprotein	TssJ
9	BN112_2628	2848503..2848898 [+], 396	412339925	lipoprotein
10	BN112_2629	2848926..2849726 [+], 801	412339926	hypothetical protein	Fha
11	BN112_2630	2849782..2852391 [-], 2610	412339927	ATPase	TssH
12	BN112_2631	2852415..2852792 [-], 378	412339928	hypothetical protein
13	BN112_2632	2852782..2853315 [-], 534	412339929	hypothetical protein
14	BN112_2633	2853312..2854406 [-], 1095	412339930	hypothetical protein	TssG
15	BN112_2634	2854403..2855062 [-], 660	412339931	hypothetical protein
16	BN112_2635	2855097..2857010 [-], 1914	412339932	hypothetical protein	TssF
17	BN112_2636	2857010..2857528 [-], 519	412339933	hypothetical protein	TssE
18	BN112_2637	2857525..2858334 [-], 810	412339934	hypothetical protein	TagJ
19	BN112_2638	2858384..2858851 [-], 468	412339935	hypothetical protein	TssD
20	BN112_2639	2858927..2860429 [-], 1503	412339936	hypothetical protein	TssC
21	BN112_2640	2860451..2861014 [-], 564	412339937	hypothetical protein	TssB
22	BN112_2641	2861057..2862106 [-], 1050	412339938	hypothetical protein	TssA
23	BN112_2642	2862761..2863321 [-], 561	412339939	hypothetical protein
24	BN112_2643	2863362..2864252 [-], 891	412339940	hypothetical protein
25	BN112_2644	2864283..2865344 [-], 1062	412339941	hypothetical protein
26	BN112_2645	2865334..2867958 [-], 2625	412339942	hypothetical protein
27	BN112_2646	2867955..2868368 [-], 414	412339943	hypothetical protein
28	BN112_2647 (vrgS)	2868385..2870748 [-], 2364	412339944	hypothetical protein	TssI
29	BN112_2648 (gspO)	2870897..2871724 [-], 828	412339945	type 4 prepilin-like proteins leader peptide processing enzyme
30	BN112_2649 (pilT)	2871971..2873011 [+], 1041	412339946	twitching mobility protein
31	BN112_2650	2873046..2873840 [+], 795	412339947	type II secretion system protein
32	BN112_2651	2873846..2874352 [+], 507	412339948	hypothetical protein
33	BN112_2652	2874357..2875727 [+], 1371	412339949	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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