I. Summary

SecReT6 ID	714
Strain	Singulisphaera acidiphila DSM 18658
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_019892
Location	2962010..2990091
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Sinac_2399	2957863..2959038 [+], 1176	430743276	phosphohydrolase
2	Sinac_2400	2959161..2959514 [-], 354	430743277	hypothetical protein
3	Sinac_2401	2959921..2961498 [-], 1578	430743278	protein related to regulatory domain of methyltransferases
4	Sinac_2402	2962010..2964067 [+], 2058	430743279	Rhs element Vgr protein	TssI
5	Sinac_2403	2964211..2964882 [+], 672	430743280	hypothetical protein
6	Sinac_2404	2964887..2965177 [+], 291	430743281	hypothetical protein	PAAR
7	Sinac_2405	2965255..2966586 [+], 1332	430743282	hypothetical protein
8	Sinac_2406	2966635..2967642 [-], 1008	430743283	type VI secretion protein	TssG
9	Sinac_2407	2967812..2969638 [-], 1827	430743284	type VI secretion protein	TssF
10	Sinac_2408	2969644..2970129 [-], 486	430743285	type VI secretion system lysozyme-like protein	TssE
11	Sinac_2409	2970308..2970790 [-], 483	430743286	hemolysin-coregulated protein	TssD
12	Sinac_2410	2970946..2972439 [-], 1494	430743287	type VI secretion protein EvpB	TssC
13	Sinac_2411	2972441..2972965 [-], 525	430743288	type VI secretion protein	TssB
14	Sinac_2412	2973186..2975075 [-], 1890	430743289	type VI secretion-associated protein, ImpA family	TssA
15	Sinac_2413	2975078..2975938 [-], 861	430743290	avirulence locus temperature-dependent protein secretion protein	TagJ
16	Sinac_2414	2976415..2977911 [+], 1497	430743291	FHA domain-containing protein	Fha
17	Sinac_2415	2977926..2979344 [-], 1419	430743292	hypothetical protein	TssM
18	Sinac_2416	2979371..2979997 [-], 627	430743293	hypothetical protein	TssL
19	Sinac_2417	2980007..2981401 [-], 1395	430743294	type VI secretion protein	TssK
20	Sinac_2418	2981828..2985772 [+], 3945	430743295	hypothetical protein
21	Sinac_2419	2985964..2987307 [+], 1344	430743296	transposase family protein
22	Sinac_2420	2987425..2990091 [-], 2667	430743297	type VI secretion ATPase, ClpV1 family	TssH
23	Sinac_2421	2991024..2992028 [-], 1005	430743298	dehydrogenase
24	Sinac_2422	2992351..2993817 [-], 1467	430743299	asparaginyl-tRNA synthetase
25	Sinac_2423	2994153..2994557 [+], 405	430743300	acetyltransferase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A