I. Summary

SecReT6 ID	717
Strain	Pseudomonas stutzeri RCH2
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_019936
Location	118402..134370
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	0	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	0	0

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Psest_0116	113461..114288 [+], 828	431925325	hypothetical protein
2	Psest_0117	114285..115076 [+], 792	431925326	hypothetical protein
3	Psest_0118	115073..115534 [+], 462	431925327	hypothetical protein
4	Psest_0119	115556..115762 [-], 207	431925328	hypothetical protein
5	Psest_0120	115976..116320 [-], 345	431925329	hypothetical protein
6	Psest_0121	116322..117569 [-], 1248	431925330	LysM domain-containing protein
7	Psest_0122	117575..118429 [-], 855	431925331	hypothetical protein
8	Psest_0123	118402..120501 [-], 2100	431925332	Rhs element Vgr protein	TssI
9	Psest_0124	120517..122034 [-], 1518	431925333	transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains	Sfa2
10	Psest_0125	122036..124627 [-], 2592	431925334	type VI secretion ATPase, ClpV1 family	TssH
11	Psest_0126	124639..125646 [-], 1008	431925335	type VI secretion protein	TssG
12	Psest_0127	125610..127400 [-], 1791	431925336	type VI secretion protein	TssF
13	Psest_0128	127453..127815 [-], 363	431925337	hypothetical protein
14	Psest_0129	127802..128437 [-], 636	431925338	hypothetical protein
15	Psest_0130	128434..130356 [-], 1923	431925339	hypothetical protein	PAAR
16	Psest_0131	130368..130775 [-], 408	431925340	type VI secretion system lysozyme-like protein	TssE
17	Psest_0132	130780..132258 [-], 1479	431925341	type VI secretion protein EvpB	TssC
18	Psest_0133	132285..132791 [-], 507	431925342	type VI secretion protein	TssB
19	Psest_0134	132808..134370 [-], 1563	431925343	type VI secretion-associated protein	TssA
20	Psest_0135	134749..135651 [-], 903	431925344	aldose 1-epimerase-like enzyme
21	Psest_0136	135761..136450 [-], 690	431925345	amino acid ABC transporter
22	Psest_0137	136447..137142 [-], 696	431925346	amino acid ABC transporter
23	Psest_0138	137207..137962 [-], 756	431925347	PAAT family amino acid ABC transporter substrate-binding protein
24	Psest_0139	137978..138751 [-], 774	431925348	amino acid ABC transporter ATP-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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