 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VPBB_1307 | 1462563..1464191 [-], 1629 | 433657589 | Sigma-54 dependent transcriptional regulator, FhlA family | |
2 | VPBB_1308 | 1464178..1466850 [-], 2673 | 433657590 | ClpB protein | TssH |
3 | VPBB_1309 | 1467305..1467823 [+], 519 | 433657591 | TypeVI secretion Hcp protein, biofilm development | TssD |
4 | VPBB_1310 | 1467896..1469974 [+], 2079 | 433657592 | VgrG protein | TssI |
5 | VPBB_1311 | 1469974..1470459 [+], 486 | 433657593 | hypothetical protein | |
6 | VPBB_1312 | 1470537..1471856 [+], 1320 | 433657594 | hypothetical protein | |
7 | VPBB_1313 | 1471837..1472829 [+], 993 | 433657595 | hypothetical protein | |
8 | VPBB_1314 | 1472822..1473766 [+], 945 | 433657596 | hypothetical protein | |
9 | VPBB_1315 | 1474001..1476004 [+], 2004 | 433657597 | hypothetical protein | |
10 | VPBB_1316 | 1476004..1477578 [+], 1575 | 433657598 | Uncharacterized protein ImpA | TssA |
11 | VPBB_1317 | 1477605..1478111 [+], 507 | 433657599 | Uncharacterized protein ImpB | TssB |
12 | VPBB_1318 | 1478120..1479595 [+], 1476 | 433657600 | Uncharacterized protein ImpC | TssC |
13 | VPBB_1319 | 1479657..1480067 [+], 411 | 433657601 | hypothetical protein | TssE |
14 | VPBB_1320 | 1480078..1481826 [+], 1749 | 433657602 | Protein ImpG | TssF |
15 | VPBB_1321 | 1481823..1482821 [+], 999 | 433657603 | Uncharacterized protein ImpH | TssG |
16 | VPBB_1322 | 1482885..1483190 [-], 306 | 433657604 | Transcriptional regulator, AsnC family | |
17 | VPBB_1323 | 1483370..1486759 [-], 3390 | 433657605 | IcmF-related protein | TssM |
18 | VPBB_1324 | 1486781..1488076 [-], 1296 | 433657606 | Uncharacterized protein ImpA | TssA |
19 | VPBB_1325 | 1488692..1489195 [+], 504 | 433657607 | hypothetical protein | |
20 | VPBB_1326 | 1489205..1490725 [+], 1521 | 433657608 | Uncharacterized protein ImpI | Fha |
21 | VPBB_1327 | 1490769..1491218 [+], 450 | 433657609 | Type VI secretion lipoprotein | TssJ |
22 | VPBB_1328 | 1491230..1492555 [+], 1326 | 433657610 | Uncharacterized protein ImpJ | TssK |
23 | VPBB_1329 | 1492552..1493343 [+], 792 | 433657611 | Outer membrane protein ImpK | TssL |
24 | VPBB_1330 | 1493493..1495016 [+], 1524 | 433657612 | hypothetical protein | |
25 | VPBB_1331 | 1495016..1495897 [+], 882 | 433657613 | hypothetical protein | |
26 | VPBB_1332 | 1496373..1496507 [+], 135 | 433657614 | hypothetical protein | |
27 | VPBB_1333 | 1496510..1497001 [+], 492 | 433657615 | hypothetical protein | |
28 | VPBB_1334 | 1497186..1497479 [+], 294 | 433657616 | hypothetical protein | |
29 | VPBB_1335 | 1497497..1497616 [-], 120 | 433657617 | hypothetical protein | |
30 | VPBB_1336 | 1497639..1498241 [+], 603 | 433657618 | SM-20-related protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein